Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 125 8e-24 seq36 105 8e-18 seq9 104 3e-17 >seq5 Length=531522 Score = 125 bits (138), Expect = 8e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||||| ||||| ||||||||| || ||||| | Sbjct 177128 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 177187 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || || || || | || |||||||| | || | || ||||||| Sbjct 177188 TCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 177247 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 177248 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 177306 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || ||||| || || || ||||| |||| Sbjct 177307 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGC 177347 >seq36 Length=226857 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| || || ||||||||||| || || || |||| || ||||||||||| ||||| | Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | || ||||||||| ||| || ||||| | Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 82855 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 82796 Query 46584 A 46584 | Sbjct 82795 A 82795 >seq9 Length=455495 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || |||||||| |||| ||||||||||| || ||||| Sbjct 294212 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 294153 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 294152 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTTCGACTTGACATT 294093 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || ||| || || || | || ||||| ||||| || || || || || Sbjct 294092 GTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 294033 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 294032 GAAGATTTGCAT 294021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| || || || | || || |||||||| || ||||| Sbjct 294512 TCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAA 294453 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | | |||||| ||| |||||| ||||| | Sbjct 294452 ATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTG 294393 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| || || |||| || || ||| Sbjct 294392 TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 294333 Query 46583 AAGATTTGCAT 46593 | | |||||| Sbjct 294332 ACTA-TTGCAT 294323 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || | ||||| ||| |||||| || |||||||||||||| | ||| || | Sbjct 294765 ACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCC 294706 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || || || || | ||||||||||| | || | || ||||| Sbjct 294705 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 294646 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| ||| | | | | ||| || ||||| || |||| || || Sbjct 294645 ATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAAT 294586 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || ||||| ||||| Sbjct 294585 AGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220651514240