Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 168 7e-37 seq5 140 3e-28 seq36 102 8e-17 seq9 89.7 5e-13 >seq3 Length=584709 Score = 168 bits (186), Expect = 7e-37 Identities = 361/524 (69%), Gaps = 24/524 (5%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| || || || || || || | Sbjct 294766 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACC 294825 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| | | Sbjct 294826 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTT-AC 294884 Query 132711 CAGGT-CGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 || || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 294885 CAAGTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGT 294944 Query 132769 TTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 | | | || || ||| |||| |||||| || ||||| | ||| |||||| ||| | || Sbjct 294945 TCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAAC 295002 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATGC 132882 |||||||||| ||| ||| ||| || || | |||||| ||| | |||| Sbjct 295003 AGCGTCGGTGATGATATCCTGGATAATTTGCTTGCTG-GCTCGG----TGCTTAAGATGC 295057 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | || || || |||||||| ||||| ||||| || | ||| || |||||||| Sbjct 295058 GAGTGCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTA 295117 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| || | ||||||||| || || || || |||||||| || || || || || | Sbjct 295118 GAGAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAAT--CGACGCAAAGG 295175 Query 133003 CCCGAA--AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 | | | ||||||| |||||| || || ||||||||||||| ||||| | |||| ||| Sbjct 295176 CACCACTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGG 295235 Query 133061 CTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 || ||| ||| ||||| || | ||||| || || |||| Sbjct 295236 AATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTT 295277 Score = 113 bits (124), Expect = 5e-20 Identities = 191/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | ||||| ||| ||||| |||| ||||| | |||||||| ||| || || Sbjct 295397 GTAGCTATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAA 295456 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | || || Sbjct 295457 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTT 295516 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || ||||| | ||| ||||| | Sbjct 295517 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATGAAGTATTT 295576 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | ||| || Sbjct 295577 CTCGTCGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTC 295636 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || || ||||| Sbjct 295637 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACAT 295672 >seq5 Length=531522 Score = 140 bits (154), Expect = 3e-28 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 177345 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 177286 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 177285 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 177227 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || ||||| | || || || ||||| || || | |||||||| | |||||| Sbjct 177226 CCAGCAACGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 177167 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 177166 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 177128 >seq36 Length=226857 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 82795 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 82854 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| |||||| | || || ||||| | Sbjct 82855 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATTG 82914 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 82915 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 82974 Query 38433 G 38433 | Sbjct 82975 G 82975 >seq9 Length=455495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || || ||| | || ||||| | | Sbjct 294778 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 294837 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || || | || || ||||| || || | ||||| Sbjct 294838 GATACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 294897 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || |||||||| |||| ||||| || | |||||||||| Sbjct 294898 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 294957 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || |||| || Sbjct 294958 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGG 295004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157094574080