Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq9 111 6e-19 >seq9 Length=455495 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || |||||||| | || |||||||| || Sbjct 294550 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 294609 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || ||||||||||||||||| ||||| ||||| || Sbjct 294610 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 294669 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || || || ||||| |||||||| | || || ||| Sbjct 294670 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 294729 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || || ||||| Sbjct 294730 ATTCAGAAGGAGTCTACTCTGCATTTAGT 294758 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || |||||||| || || || || ||| Sbjct 294021 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 294080 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||||||||| || ||||| || Sbjct 294081 GATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACCAG 294140 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| |||| ||| | || || || || || || || | ||| | | ||||| || Sbjct 294141 CAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 294200 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| ||||||||||| Sbjct 294201 ATTCAGAAGGAGTCAACACTTCAC 294224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975654811503296