Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq92 136 3e-26 >seq92 Length=127651 Score = 136 bits (150), Expect = 3e-26 Identities = 450/694 (65%), Gaps = 13/694 (2%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| |||||| ||||| | ||||||||||| || | |||||| || |||||||| Sbjct 99421 TTTTCAACGGCAGAGACATTCATGATACCATTGGCGTCGAGATCAAAGGTAACTTCAATC 99480 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || || | |||| || || || || | | ||| | |||| || Sbjct 99481 TGAGGAACACCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATCAGGTTG 99540 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || ||| | ||| || ||||| || | ||||| || ||| || || Sbjct 99541 TTGTCCTTGGTGCGCTGTCGCTCGCCCTCAAAGACCTGGATGAGCACCCCAGGCTGGTTG 99600 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || ||| | || | || ||| ||| || || ||||| |||||||| | |||| Sbjct 99601 TCAGAAAAGGTCGAGAAAACTTCGGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATA 99660 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | || ||||| || ||||| || || || | ||| ||||| | ||||| ||| |||| Sbjct 99661 AGCTTCGTCATCATTCCACCGGCGGTCTCGATACCCAGAGACAAAGGAGCGACGTCAAGC 99720 Query 517550 AGGACAATATTTTG-AAGT----TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAA 517604 | |||| |||| | ||| || | ||| | |||| || ||||| || || | Sbjct 99721 A--ACAAGATTTCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGA 99778 Query 517605 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 517664 ||| ||||| || |||||||| |||||||| || | || | || | | ||| || | Sbjct 99779 CAGCGGCACCGTACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGT 99838 Query 517665 TGAAAAAATTTGAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTA 517721 |||| | | || | |||| ||| ||| ||||| || | || || ||||| | Sbjct 99839 TGAAGTAGTCGGAGATGAGTT-TCTGGATAC--GGGGAATTCGGGTGGAACCACCAACCA 99895 Query 517722 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 517781 | ||||| ||||| || || ||||| || | || | || | ||| || || | Sbjct 99896 AGACAATCTCATGAACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAG 99955 Query 517782 GTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 517841 | | | | || || | || ||||| |||||||| || | |||| || Sbjct 99956 GCTGGATGGTGGATCGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAG 100015 Query 517842 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 517901 | | |||| || || ||||| | || |||| ||||||||||| |||| | || Sbjct 100016 GGGTGTAGAAATCGATACCCTCGAATAGGGAGTCAATCTCAATCGTAGTCTGAGCTGCAG 100075 Query 517902 AAGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 |||| || | || || |||||||| || || || Sbjct 100076 AAGAGAGGGTGCGCTTGGCACGTTCGCAAGCAGT 100109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780697746285472