Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq92 205 1e-47 seq19 140 4e-28 >seq92 Length=127651 Score = 205 bits (226), Expect = 1e-47 Identities = 493/741 (67%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 7406 TTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||||||||||| || || || || || | | ||||| || || | |||||| || Sbjct 100205 TTCTTATGTTTGCGCTTGAATTCGTTGACA-AAGTGGTTAACAAGGCGGTTATCGAAGTC 100263 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || ||||| | ||||| || |||||||| | ||||| Sbjct 100264 CTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCAAT 100323 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGT 7581 | | | || ||||| || ||||||||||| || || ||||| || || || | Sbjct 100324 TGTGAGGAGAGACACATCGAAGGTACCACCACCTAGATCGAAAATCAGGACATTGCGCTC 100383 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | ||| |||| ||| ||||||||||| || ||||| || || || || || || || Sbjct 100384 ACCCTCGACTTT---CTTGTCGAGACCGTAGGCAATAGCGGCGGCAGTAGGCTCGTTGAT 100440 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||||||| ||| || || |||||| | || || || || || || || || || Sbjct 100441 GATACGAAGGACGTTGAGTCCGGCAATACGACCGGCGTCCTTGGTAGCCTGCCGCTGAGA 100500 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| ||||| || ||||| |||| || ||| | || | | | Sbjct 100501 GTCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTCGGGACCGGTGTGCCCAAAAAGCC 100560 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || || || || ||| ||| | || | ||| || || || || |||| | || | Sbjct 100561 CTCGGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCCTCAGGTGTGAATTC 100620 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 ||| ||| || || || ||||| | | || ||||| | | || || Sbjct 100621 CTTCTCTTCGCCTTTGAATTCAACCTTGACCAAAGGTTTGCCTTGTTTTTC---AATCAC 100677 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | | | |||||||| | ||||||| | | || ||||| | || || Sbjct 100678 CTTGAAGGGAAAGTGCTTCATATCAGCCTGGACCTCTGGATCGTCGAACTTGCGGCCAAT 100737 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | |||||| || || || || ||||| | |||||||| || || ||||| || || Sbjct 100738 CAAACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATAGCGACCTGATTCTTGGCAGC 100797 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || || || ||||| || | || | || ||||| | |||||||| ||||| || Sbjct 100798 ATCGCCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGGGTAGTTCGGTT 100854 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || || || || | ||||||||| ||||| | | ||| | ||||| || || Sbjct 100855 ACCCTGCTCATTGGGAATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCAAGAGTA 100914 Query 8122 CGTTGTTCCTAAATCAATACC 8142 ||| || || || || ||||| Sbjct 100915 CGTGGTACCCAAGTCGATACC 100935 Score = 185 bits (204), Expect = 1e-41 Identities = 534/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 99310 TCATCCTCCTCCTTGTACTTCTCGGCTTCAGACAGCATACGCTCGATGTCTTCTTTGGAT 99369 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||||| | |||| || | Sbjct 99370 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCCGTGCCCTTTTCAACG 99429 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| || || | ||| || | || | ||| || || | Sbjct 99430 GCAGAGACATTCATGATACCATTGGCGTCGAGATCAAAGGTAACTTCAATCTGAGGAACA 99489 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | | |||| ||| | Sbjct 99490 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATCAGGTTGTTGTCCTTG 99549 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | || |||| |||| || || || Sbjct 99550 GTGCGCTGTCGCTCGCCCTCAAAGACCTGGATGAGCACCCCAGGCTGGTTGTCAGAAAAG 99609 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | || ||||| | |||||| || || || | ||||||| | ||| Sbjct 99610 GTCGAGAAAACTTCGGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATAAGCTTCGTC 99669 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || |||| || ||||||| ||| | ||||| | | || | Sbjct 99670 ATCATTCCACCGGCGGTCTCGATACCCAGAGACAAAGGAGCGACGTCAAGCAACAAGATT 99729 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | | ||| | | ||||| | | ||| || || ||||| | || ||| Sbjct 99730 TCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 99789 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | ||||| ||||| || || || Sbjct 99790 TACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAGTCG 99849 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || || || ||||| || || ||||| ||||| || || |||| Sbjct 99850 GAGATGAGTTTCTGGATACGGGGAATTCGGGTGGAACCACCAACCAAGACAATCTCATGA 99909 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 99910 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAGGCTGGATGGTGGAT 99969 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || || || ||||| || |||||||| | || |||||||| Sbjct 99970 CGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 100029 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| || ||||| ||||| || || || || | ||||| | || ||| Sbjct 100030 ATACCCTCGAATAGGGAGTCAATCTCAATCGTAGTCTGAGCTGCAGAAGAGAGGGTGCGC 100089 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 100090 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 100130 >seq19 Length=304147 Score = 140 bits (154), Expect = 4e-28 Identities = 496/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 168742 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCTTC 168801 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 168802 TTACCGTCAAAGAAATCGGAAAGAAGCTTCTGGATCTTGGGAATACGGGTAGAACCACCA 168861 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 168862 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 168921 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || || || ||||| Sbjct 168922 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAACCGAGCACG 168977 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 |||||||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 168978 GGTAATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 169037 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 169038 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 169095 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 169096 GCACGGGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 169155 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 169156 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 169214 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 169215 GACAGTGAAGACACCACCCTGGATGTTGAGAAGTGACACATCGAAAGTACCACCACCAAG 169274 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | || ||| | |||||||| || || Sbjct 169275 ATCGTAGATCAGGACGTTGCGCTCCTTCTCAGACTTGCCAGAGCCCAGACCGTAGGCAAT 169334 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || ||||| |||| || |||| || || |||| || | | | Sbjct 169335 GGCGGCAGCGGTGGGCTCGTTAATGATACGGAGGACA-TTGAGACCAGATATGGCACCGG 169393 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 169394 CGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 169453 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | ||| ||||| ||||| | | || || || || ||||| Sbjct 169454 TCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCCTTCAT 169496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112856830080