Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq36 237 2e-57 seq3 111 2e-19 >seq36 Length=226857 Score = 237 bits (262), Expect = 2e-57 Identities = 1108/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| ||||||| || || | || || ||| Sbjct 154753 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGAACGCGTT 154812 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||| ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 154813 TTGGAGACTTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTC 154872 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| || | || |||| |||||||| ||| | ||||| || Sbjct 154873 AACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGAC 154932 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 154933 AGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 154992 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | |||| | ||| ||| || || || Sbjct 154993 GGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAAC 155052 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| ||| | || || ||||| ||||||||||| || ||| ||| || | || || Sbjct 155053 GGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTT 155112 Query 111972 AACCAAGCTGGGCGTC-GCAAGGGATCT------ATCGCAGTCTATCTTGAGCCATGGCA 112024 |||| ||||| | ||| || || | || |||| || ||||| ||||| Sbjct 155113 GACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCA 155168 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| || | | || || ||||| ||||| ||||| || | || || | ||| Sbjct 155169 CGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA-AAACCGTG 155227 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||||| ||||| ||||| |||||||| ||||||||| | || || || Sbjct 155228 CTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAGGA 155287 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || ||||| | ||| | ||||| || || || || || | ||| | || | Sbjct 155288 ACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCG 155347 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||||||||| || |||||| ||||| ||| || | || ||| | ||| | Sbjct 155348 AGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 155406 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| || | || ||||| || || | || | Sbjct 155407 CGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGGGCAACCCCTT 155465 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| |||||||| ||||| ||| ||||| || || || ||| |||| || Sbjct 155466 TATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGGGAACCATTCG 155525 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || || || || || || || ||| | || | | | |||||| ||||| || Sbjct 155526 CAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTTTG 155585 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | || || || | || || | | | | || | | | || | Sbjct 155586 CAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGACT 155644 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || || ||| ||||| |||| | || ||| Sbjct 155645 TCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATCGATG 155704 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 155705 TCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 155764 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | || || ||| | || || || | Sbjct 155765 TTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTCCC 155823 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 155824 GAGGCCCGTGAGCTCAACAAGCAAATTTTCGAGACCATTTACCACGCTGCCCTGACAGCC 155883 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 155884 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCG 155943 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| || ||||| || || |||| |||| || |||| |||| | || Sbjct 155944 GAAGGTGTTCTTCAGTTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGGAG 155997 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| | ||||| | |||||| || | ||| |||| ||| || || || | | Sbjct 155998 TGGGACAACTTGAAGGAGCAGATCAAGCAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 156055 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||| ||| | |||||| ||||||| ||||| |||||||| || | Sbjct 156056 CTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAACAATGAGTGCTTTGAGCCAT 156115 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 156116 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 156175 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||| ||||| | | |||||| | | ||| Sbjct 156176 GGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAACCGCATCA 156235 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | ||||||||||| || ||| |||| || | || || ||| | | Sbjct 156236 TTGCCGAGAACGGTTCCATTCAGAACATTCCCAATATCCCCGCCGACATCAAGGCTCTCT 156295 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 156296 ACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGTG 156355 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 || || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 156356 CTTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 156413 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 156414 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 156471 >seq3 Length=584709 Score = 111 bits (122), Expect = 2e-19 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 102261 ||| ||||| ||||||||| |||| |||| |||| | |||| |||||||||||||| | Sbjct 295201 TGTGGAGGGCATCTTCTTCAGTGGTGCCTT-TGCGTCGATTTTCTGGCTCAAGAAGCGTG 295143 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 |||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 295142 GTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACA 295083 Query 102322 AAGAGTTTGC 102331 ||| ||||| Sbjct 295082 CAGACTTTGC 295073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722908688640