Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36 219 5e-52 >seq36 Length=226857 Score = 219 bits (242), Expect = 5e-52 Identities = 1093/1707 (64%), Gaps = 59/1707 (3%) Strand=Plus/Minus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| ||| |||| || ||| | || ||||| ||||| |||||||| Sbjct 156506 AACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCC 156447 Query 109438 GCCTTCCATGCGTACATA-TGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| || || | ||||| || | || ||| | || ||| || ||| Sbjct 156446 AACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTG 156388 Query 109497 CAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT 109556 | ||| | |||||| ||||| ||||| || ||| ||||| || ||||| | ||| | Sbjct 156387 AACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCATCTGGATAAC 156328 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || ||| ||||| ||||||||||| | | |||||| || |||| || | Sbjct 156327 ATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATT 156268 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 ||||| ||||| || ||| || | |||| | | |||||| | | || Sbjct 156267 GGGAATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGA 156211 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||| ||||| | | |||||| | | || |||||| || |||||||| Sbjct 156210 CCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACC 156151 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| | || || |||| ||||| | |||||| || || || ||||||||||| || Sbjct 156150 AGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACC 156091 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 |||||||| | || || || |||||||||||||| | || | ||| || | ||| Sbjct 156090 CAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACC 156031 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | ||| | | |||| || |||||| || | || ||| | || || Sbjct 156030 GTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTC----CCACAACTCAGA--AGGCTT 155977 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||| |||||| || ||||| ||||| || | || ||||| |||||||| | Sbjct 155976 GACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGA 155917 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCT-AGTGCCGCATGATACATA 110031 ||| | || | | | ||||| ||| | || || || | || || || || || || Sbjct 155916 GTAGGGGCCTTGCTCTTTGGCCAGCTC--AAGAGAGGCTGTCAGGGCAGCGTGGTAAATG 155859 Query 110032 GTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 ||||| ||||| || || |||| || | ||| | | |||||||| | | Sbjct 155858 GTCTCGAAAATTTGC---TTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG- 155803 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || ||| | || || |||||||||||||| | ||| ||||| ||||| ||| Sbjct 155802 CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCAT 155743 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| || | ||||||| |||| ||||||| | ||||| || Sbjct 155742 GTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTT 155683 Query 110208 CTT--CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 || | || | | || | || ||||| || | | | ||| | | | ||| Sbjct 155682 ACGGACGAC-CACT-TGAGTCACCTCGTGGAGCTTCTGGAAGTCGTA-GCGGCCTTCTTT 155626 Query 110266 TTATT-GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 || | ||| | || || |||| ||| || | ||||| |||| | ||| || Sbjct 155625 GTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG 155566 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || ||||| |||| || || || |||| |||| || || Sbjct 155565 GGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTT 155506 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || || |||||| ||||| || || ||||| | ||| | || ||||| || Sbjct 155505 CTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGT 155446 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGA- 110500 ||| | || ||| |||| | ||| | | || | ||| | | ||| |||| || | Sbjct 155445 CTGGGCCTCGAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCG---GCCAC 155390 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || || ||| ||||| ||| | ||||||| |||| || || ||||| | Sbjct 155389 GGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCA 155330 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCT--CAACCCTCTT 110618 | || || || |||||| | ||||| ||||| || | |||| | || | ||| Sbjct 155329 GGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCCCGTTCCTTTCGACGCGCTT 155272 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678 |||||| || || || ||||||| || ||| ||||| || ||| ||||| | Sbjct 155271 CATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTT 155212 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 || ||||| || | || | |||||| | | || | |||||| || ||||| || Sbjct 155211 GCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTA 155152 Query 110739 GACAGCGA-TGGA-----TCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 || ||| | || | || |||| | ||| |||| ||| || | || ||| Sbjct 155151 GATAGCAAATGCACCAGGTCGCTTATTGCCGCCC---TGGTCAACGTATCTGGCAGTGTT 155095 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 |||||||| | ||||| ||||| || || | |||| ||| || || || ||| Sbjct 155094 GTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTA 155035 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 || ||||||| ||| ||||| | || || |||||||| ||| ||| || Sbjct 155034 AGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGAT 154975 Query 110913 TTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971 ||||| ||| |||| || | || ||||| ||||| || |||| || ||| Sbjct 154974 CATGGCACAGGTCT-TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAA 154916 Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031 ||| || || ||||||| |||| | || || || || |||||||||||||||| | Sbjct 154915 CTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGG 154856 Query 111032 CATGAATGAACAGACCTTG--GGACAT 111056 | || ||| ||| |||| |||||| Sbjct 154855 CGTGGGTGA--AGAGCTTGCTGGACAT 154831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957506153600