Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36 242 4e-59 >seq36 Length=226857 Score = 242 bits (268), Expect = 4e-59 Identities = 1162/1811 (64%), Gaps = 57/1811 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 156470 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 156412 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| || || | ||| |||| |||| || || | Sbjct 156411 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAAGCA 156354 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | || ||||| | || |||| | || ||||| || || |||| Sbjct 156353 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAG 156294 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | ||||||| | || || ||||| ||||| | | || || Sbjct 156293 AGAGCCTTGATGTCGGCGGGGATATTGGGAATGTTCTGAATGGAACCGTTCTCGGCAATG 156234 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||||||||| || | |||||| |||| ||| Sbjct 156233 A---TGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGC 156177 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 156176 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 156117 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| |||||| | ||| ||||| || ||||| || Sbjct 156116 TATGGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGA 156057 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | | |||||| | ||||| | |||| Sbjct 156056 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCC 155999 Query 106068 AGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || | | || || || || |||| |||| || || ||||| || |||| || Sbjct 155998 ACTCCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAACTGAAGAACACCTTCCGA 155941 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || | Sbjct 155940 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGG 155882 Query 106186 CTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 || ||||| ||||| || ||||| || || || | || | ||| ||| || Sbjct 155881 CTGTCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGG 155822 Query 106245 CTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || | ||| || | || ||| | || || ||||| |||||||| | | Sbjct 155821 GAGACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACA 155763 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || |||| |||||||| || || || || ||||| ||| ||| || Sbjct 155762 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 155703 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 || |||| ||| || || | || | | || | || || || || | | Sbjct 155702 TCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAG 155643 Query 106424 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || | || ||| | | | ||| | || ||||| | || ||||| ||||| Sbjct 155642 TCGTAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCA 155584 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 |||||| |||||| | |||||| | || || || |||| || || || Sbjct 155583 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCG 155524 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 ||| || |||| ||| || ||||| ||||| ||||||| ||||| ||||| ||||| | Sbjct 155523 AATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAA 155464 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | ||||| || ||||| | || ||| || | | ||| | | || | ||| | Sbjct 155463 GGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG-- 155407 Query 106662 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 ||| | || |||| || ||||| ||| ||||| |||||| || |||||||||| Sbjct 155406 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCT 155348 Query 106719 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| || || | || || || || || ||||| | || | ||| | || Sbjct 155347 C-GCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCC 155291 Query 106778 CCCTCC--TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 106835 | ||| || || |||||||||||||| ||||| |||||||| | ||||| || | Sbjct 155290 CGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 155231 Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895 | || ||||| | || ||||| ||| || ||||| || || | | || | Sbjct 155230 GAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTG 155171 Query 106896 CGTGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGA 106948 ||||||| ||||| || ||| | ||| || || ||| | | ||||| || Sbjct 155170 CGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCC----TGG 155115 Query 106949 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 107008 | || || | || ||| ||| || ||||||||||| ||||| || || | ||| | Sbjct 155114 TCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTA 155055 Query 107009 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068 || || || || ||| ||| |||| | | |||| || || || ||| Sbjct 155054 CCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATA 154995 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 154994 CCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATG 154935 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 ||| ||||| || | | ||||| || |||| ||| | || |||||||| Sbjct 154934 CTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCG 154875 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246 |||||||| || |||| ||||| ||| | | |||| |||||| || ||| |||| Sbjct 154874 TTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAAGTCT 154817 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 |||| || || |||| || || || |||| || || ||||||| ||||| | Sbjct 154816 CCAAAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCT 154757 Query 107307 GGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 107365 | ||| || | || |||| | ||| ||||||| | || |||| || || ||| Sbjct 154756 GAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTG 154698 Query 107366 AGACCAAAGTA 107376 | |||||||| Sbjct 154697 AAGCCAAAGTA 154687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962274602880