Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq36 104 3e-17 >seq36 Length=226857 Score = 104 bits (114), Expect = 3e-17 Identities = 218/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || ||||| || | | | ||||| || || || |||||||| | | Sbjct 155358 CTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGT 155299 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | ||| || | |||| || | |||||| ||||| ||||| | || Sbjct 155298 CCAATCCCCGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAA 155239 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| ||||| ||| || | ||||||||||| | Sbjct 155238 GAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAA 155179 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| ||||| || || Sbjct 155178 CACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCC 155119 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 155118 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA 155059 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 | |||| ||||| || | ||| ||| Sbjct 155058 TGTACCGTTGGTGCCGGCAATGTAA 155034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091149783680