Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq92 158 1e-32 seq9 100 2e-15 seq122 91.5 1e-12 >seq92 Length=127651 Score = 158 bits (174), Expect = 1e-32 Identities = 460/702 (66%), Gaps = 11/702 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 100127 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 100068 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | || || |||| ||||| || |||| | || |||||| | Sbjct 100067 CAGACTACGATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 100008 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| |||| ||||| || || || || | || || || Sbjct 100007 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGAC 99948 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 99947 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 99888 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || ||||||| | || |||| | | | | || ||||| || ||| Sbjct 99887 GGTTCCACCCGAATTCCCCGTA-TCCAGAAA-CTCATCTCCGACTACTTCAACGGCAAAG 99830 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || |||||||||||||| || |||||||| | || || | Sbjct 99829 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 99770 Query 552253 CTATTCTTTCTGGACAAACTGATGAAAA----ACT-ACAAAATATTGTACTTGTAGATGT 552307 |||| || ||||| | ||| | || ||| || |||| |||| | | || || Sbjct 99769 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGT 99712 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 ||||| | ||||| ||| | || || | || || || ||||| || ||||| | Sbjct 99711 CGCTCCTTTGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCG 99652 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || || || || || || | ||| || || || | Sbjct 99651 TAACACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCC 99592 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 || || || || | ||||| || || || | ||| || || || || | | Sbjct 99591 TGGGGTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGAT 99532 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 99531 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 99472 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||| || ||| |||| |||||||| || ||||||| |||| Sbjct 99471 TACCTTTGATCTCGACGCCAATGGTATCATGAATGTCTCTGC 99430 Score = 131 bits (144), Expect = 1e-24 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| ||||||| || |||||| ||||||| ||||||| ||| | |||| || Sbjct 100878 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCAATGAC 100819 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| ||| || Sbjct 100818 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 100759 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || || ||||| ||||| | | || | ||| | || ||||| ||| Sbjct 100758 GTCTTCGACGCCAAGCGTTTGATTGGCCGCAAGTTCGACGATCCAGAGGTCCAGGCTGAT 100699 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||||| | | ||| | Sbjct 100698 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGCAAACCTT-TGGTCAAGGTTGA 100640 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| || |||| || || ||| | | || Sbjct 100639 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAGGAAATATCTTCCATGATCCTCATC 100582 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || ||||| |||| || | || || | || || | | Sbjct 100581 AAGATGCGCGAGATTGCCGAGGGCTTT--TTGGGCACACCGGTCCCGAACGCTGTCGTCA 100524 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || || || ||||| || || || || ||||||| Sbjct 100523 CTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGTATTG 100464 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| || || | Sbjct 100463 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCCTACGGTC 100404 Query 550530 TTGATAA 550536 | || || Sbjct 100403 TCGACAA 100397 >seq9 Length=455495 Score = 100 bits (110), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | || ||||| || || ||||| || ||| || || | Sbjct 294995 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 294937 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| |||||||| || || || Sbjct 294936 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTC 294877 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || || || ||||||| || | | ||| | | Sbjct 294876 CTTATCCTGAATCTTAGATTTGACATTGTCGATGGTATCAG-AAGATTCGACTTCCAAGG 294818 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| | || || || |||||||||||| Sbjct 294817 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 294777 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||| || ||| || || ||||||||| || | | ||||| Sbjct 294767 AGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGG 294708 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || || ||||| || |||| ||||| ||||| ||||| ||||| Sbjct 294707 CCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCC 294648 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||||||||| || ||||| || || ||||| | | || | | ||| | || Sbjct 294647 TTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAG-GATTCAACTTCCAATGT 294589 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||| || ||||| | ||| || ||||| || |||||| Sbjct 294588 AATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 294549 >seq122 Length=79381 Score = 91.5 bits (100), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 || ||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 54137 ACCGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 54079 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 54078 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 54019 Query 550528 ACTTGATAA 550536 || ||||| Sbjct 54018 CCTCGATAA 54010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029163154110880