Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq92 158 1e-32
seq9 100 2e-15
seq122 91.5 1e-12
>seq92
Length=127651
Score = 158 bits (174), Expect = 1e-32
Identities = 460/702 (66%), Gaps = 11/702 (2%)
Strand=Plus/Minus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|| || |||||||| | |||||||||||| | ||||| || | || || |||| ||
Sbjct 100127 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 100068
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| || || ||||| | || || |||| ||||| || |||| | || |||||| |
Sbjct 100067 CAGACTACGATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 100008
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
||||| || ||||| |||| ||||| || || || || | || || ||
Sbjct 100007 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGAC 99948
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| ||| | | || | |||||||| ||||| |||| ||||| ||||| | ||||||
Sbjct 99947 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 99888
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192
|| || || ||||||| | || |||| | | | | || ||||| || |||
Sbjct 99887 GGTTCCACCCGAATTCCCCGTA-TCCAGAAA-CTCATCTCCGACTACTTCAACGGCAAAG 99830
Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252
| || | | | || || |||||||||||||| || |||||||| | || || |
Sbjct 99829 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 99770
Query 552253 CTATTCTTTCTGGACAAACTGATGAAAA----ACT-ACAAAATATTGTACTTGTAGATGT 552307
|||| || ||||| | ||| | || ||| || |||| |||| | | || ||
Sbjct 99769 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGT 99712
Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367
||||| | ||||| ||| | || || | || || || ||||| || ||||| |
Sbjct 99711 CGCTCCTTTGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCG 99652
Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427
|| || || ||||| || || || || || || || | ||| || || || |
Sbjct 99651 TAACACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCC 99592
Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487
|| || || || | ||||| || || || | ||| || || || || | |
Sbjct 99591 TGGGGTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGAT 99532
Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547
|| | ||| | | || ||||| || ||||| ||||| || || || ||||||||
Sbjct 99531 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 99472
Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||| || ||| |||| |||||||| || ||||||| ||||
Sbjct 99471 TACCTTTGATCTCGACGCCAATGGTATCATGAATGTCTCTGC 99430
Score = 131 bits (144), Expect = 1e-24
Identities = 325/487 (67%), Gaps = 10/487 (2%)
Strand=Plus/Minus
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
||||||||| ||||||| || |||||| ||||||| ||||||| ||| | |||| ||
Sbjct 100878 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCAATGAC 100819
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
|| || | | | |||| ||||| || || |||| | | || || ||| ||| ||
Sbjct 100818 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 100759
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
| || || || || ||||| ||||| | | || | ||| | || ||||| |||
Sbjct 100758 GTCTTCGACGCCAAGCGTTTGATTGGCCGCAAGTTCGACGATCCAGAGGTCCAGGCTGAT 100699
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291
|||||||| | || ||| | | || | || ||||||| | | ||| |
Sbjct 100698 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGCAAACCTT-TGGTCAAGGTTGA 100640
Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351
| ||| |||| | || |||| |||| || |||| || || ||| | | ||
Sbjct 100639 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAGGAAATATCTTCCATGATCCTCATC 100582
Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409
|| ||| | | ||| || ||||| |||| || | || || | || || | |
Sbjct 100581 AAGATGCGCGAGATTGCCGAGGGCTTT--TTGGGCACACCGGTCCCGAACGCTGTCGTCA 100524
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
|||| || || || || || ||||| || || || ||||| || || || || |||||||
Sbjct 100523 CTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGTATTG 100464
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
| ||||| || || |||||||| ||||| || |||||||| || || |||| || || |
Sbjct 100463 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCCTACGGTC 100404
Query 550530 TTGATAA 550536
| || ||
Sbjct 100403 TCGACAA 100397
>seq9
Length=455495
Score = 100 bits (110), Expect = 2e-15
Identities = 158/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315
||||| || || ||||| | || ||||| || || ||||| || ||| || || |
Sbjct 294995 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 294937
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
||||| || || ||||||||||||||||||| |||||| |||||||| || || ||
Sbjct 294936 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTC 294877
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
||||| ||||| || ||| || || || ||||||| || | | ||| | |
Sbjct 294876 CTTATCCTGAATCTTAGATTTGACATTGTCGATGGTATCAG-AAGATTCGACTTCCAAGG 294818
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| ||| || ||||| | || || || ||||||||||||
Sbjct 294817 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 294777
Score = 93.3 bits (102), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || | ||| || ||| || || ||||||||| || | | |||||
Sbjct 294767 AGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGG 294708
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || || || || || ||||| || |||| ||||| ||||| ||||| |||||
Sbjct 294707 CCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCC 294648
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435
||||||||||| || ||||| || || ||||| | | || | | ||| | ||
Sbjct 294647 TTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAG-GATTCAACTTCCAATGT 294589
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| ||| || ||||| | ||| || ||||| || ||||||
Sbjct 294588 AATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 294549
>seq122
Length=79381
Score = 91.5 bits (100), Expect = 1e-12
Identities = 99/129 (77%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467
|| ||||| || || |||||||| | || ||||| ||| || || |||||||| | ||
Sbjct 54137 ACCGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 54079
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || || |||||||| ||| | |||| || || ||||||||||| ||||| |||||
Sbjct 54078 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 54019
Query 550528 ACTTGATAA 550536
|| |||||
Sbjct 54018 CCTCGATAA 54010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029163154110880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |