Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq36 370 2e-97 seq3 140 6e-28 >seq36 Length=226857 Score = 370 bits (410), Expect = 2e-97 Identities = 1147/1748 (66%), Gaps = 74/1748 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 156512 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 156453 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 156452 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 156400 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | Sbjct 156399 --ATCCTT------CATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGA 156348 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || |||||||| | || | || | ||| || | |||||| || |||||| ||| | Sbjct 156347 TCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCC 156288 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCT 212850 |||| ||| | |||| ||| |||||||| | || || || | | | || | | Sbjct 156287 TTGATGTCGGCGGGGATATTGGGAATGTTCTGAATGGAACC---GT-TCTCGGCAATGAT 156232 Query 212851 GCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 || | |||| | || ||| || ||| | | || ||||| || || Sbjct 156231 GCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGG 156172 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| || Sbjct 156171 GTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGG 156112 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| | || ||| ||||| ||||| || || | || ||| |||||||||||||| | Sbjct 156111 CTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAG 156052 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCCAGTCC 213086 ||| | ||| | | ||||||| ||| | | || ||| | | |||| ||| Sbjct 156051 CAGCAACGAGTTGCGAATACCGTGCTGCTTGATCTG-CTCCTTCAAGTTGT-CCCACTCC 155994 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || |||| ||| ||| || ||||||||||| ||||| | | |||| Sbjct 155993 CACAACTCAGA-AGG--------CTTGACATTCCACATGTCGAACTGAAGAACACCTTCC 155943 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || Sbjct 155942 GAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAG 155883 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 || ||||||||||| ||| ||||| || || || | | ||||||||| |||||| Sbjct 155882 GCTGTCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCG 155823 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACA-CATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| ||||||||| || | | ||| | | || || || ||||| || || | Sbjct 155822 GGAGACTCGAAGGGCATGCGCA-GAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAAC 155764 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 |||||||||| |||| || ||| ||| |||| |||||| | ||||||| |||| Sbjct 155763 ACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGGTTGA 155705 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 |||||||||||||||||||| ||| | |||||| || || | | || | || | Sbjct 155704 CATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGG- 155646 Query 213445 GATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCA 213498 || |||||| || || | || || |||||||||| | ||||| Sbjct 155645 -----AAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCA 155591 Query 213499 GGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 ||||||||| || ||||| | || | | |||||| |||||||| |||||||| || Sbjct 155590 AGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAG 155531 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 || || ||||| ||||| || | ||||| ||| |||| | ||| ||||| | Sbjct 155530 AGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACA 155471 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGG 213678 |||| ||||| || || || ||||| | | || || | |||||| | | || Sbjct 155470 GCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGG 155411 Query 213679 CCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTG 213737 | || | | || | || ||| | | | ||| |||| |||||||| | | Sbjct 155410 C----ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCA 155355 Query 213738 AATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCA 213796 || || | ||| || | | | |||| || || || ||||||||||||| |||| Sbjct 155354 AACTCCTCGCCATAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA 155296 Query 213797 GTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 ||||||| | | || ||| | || |||||| || || |||| |||||| || ||| | Sbjct 155295 ATCCCCGTTCCTTTC-GACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGA 155237 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 |||| | | | | || ||| || ||| || |||| ||| ||||||||||| | Sbjct 155236 GGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACA 155177 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCT 213972 ||| |||||||| ||||| | |||||| ||||| || || | || | |||||||||| Sbjct 155176 CGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCT 155117 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 |||| || ||||| ||||||||| ||| || | ||| | | |||||||| | Sbjct 155116 GGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA-T 155058 Query 214033 GT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAG 214087 || |||||||| || || || || ||||||| ||| | || ||| |||| | Sbjct 155057 GTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCAC---GGATGC-GGTGGACGTTCAA 155002 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || || ||||| || ||||||||||||||| ||| | | | ||| || ||| || Sbjct 155001 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 154942 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | | |||||||| || | | || | | ||| ||| || ||||| || | Sbjct 154941 GTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 154882 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 |||| |||||| || || || ||| ||| | | | |||| | || | ||| ||| Sbjct 154881 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 154822 Query 214268 GGTCTCCA 214275 ||||||| Sbjct 154821 AGTCTCCA 154814 >seq3 Length=584709 Score = 140 bits (154), Expect = 6e-28 Identities = 350/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || |||| ||||| |||||||||||||| || |||| || ||||||||| Sbjct 294782 TGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCC 294841 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCAG 47958 ||||| ||||||||||| || || || ||| | || ||| || ||| || Sbjct 294842 ATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTT-TCGTTACCAAGTGCAACCAATAG 294900 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG- 48017 |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 294901 ACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGC 294960 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||| || ||||| || | |||||| | ||| || || || || | || | Sbjct 294961 ACACGG-CAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATGATAT 295019 Query 48078 GCT---TAACGCGGGACTCTGAGGGTTTGTTGCGCAGG-TGCTTGGCATAGAGCATGCAG 48133 || ||| | || || || | | ||| | | ||| | | | || || Sbjct 295020 CCTGGATAATTTG---CT-TGCTGGCTCGGTGCTTAAGATGCGAG---TGCAACAGACAT 295072 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| ||||||| || || || ||| ||| || |||| |||||| ||| || Sbjct 295073 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 295132 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || |||||||||||||| | ||| || | ||| |||||||||| Sbjct 295133 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCACTGAAGAAGATG 295192 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGAT 48312 |||||||| || ||||| || | | || |||| | | ||||| |||| || Sbjct 295193 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGA-AT 295251 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||||||||| || ||| |||||| || Sbjct 295252 CCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 295290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503549870080