Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq36 349 6e-91 seq3 118 2e-21 >seq36 Length=226857 Score = 349 bits (386), Expect = 6e-91 Identities = 867/1289 (67%), Gaps = 63/1289 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 ||||||||||||||||| |||||||| || || ||||||||| ||| || ||||||| Sbjct 155879 GTCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAG-CTCACGGGCCTCGGG 155821 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| ||||||| || ||||| || || | ||| Sbjct 155820 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACC 155761 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| |||||| Sbjct 155760 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 155704 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||||| | ||||||||||| | || |||| | ||||||| ||||||||| Sbjct 155703 ATCGATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAA 155644 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || || || || ||||||| Sbjct 155643 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACGAAGGCAGGCAGGGCAAGAGA 155596 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || ||||| || | |||| |||||||| || || || Sbjct 155595 GGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 155536 Query 221773 GTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||||| ||||| ||||| | || || || ||| | ||| || || Sbjct 155535 ATTAGAGCTGCGA---ATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATC 155479 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 ||||| ||||||||||| ||| || || ||| ||| | || || || |||||| Sbjct 155478 TTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAG 155419 Query 221890 TTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATA 221946 | ||||| | | | ||| | | | ||||| || ||||| | ||| | Sbjct 155418 CT-TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT---CATACTTCTCGTAGA 155363 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | |||||| || || || || ||||||| || ||| | ||||||||| Sbjct 155362 GAGCCT--CAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACAT 155305 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || |||| | | ||| || ||| | || |||||| || || ||||||||||| || Sbjct 155304 GAGGGTCCAATCCCCGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGC 155245 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | ||||| || | | || | || ||| ||||| ||| || | || ||| | ||| Sbjct 155244 AAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAA 155185 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||||| | ||| |||||||| ||||| || |||| || | || || |||||||| || Sbjct 155184 GTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATT 155125 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||| ||||| || || || ||| | |||||||| |||||| | || | | | Sbjct 155124 GCCGCCCTGGTCAACGTATCT-GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGC 155066 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG- 222302 |||||||| |||||||||||| |||||| | ||| ||| | || | | ||| Sbjct 155065 CGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCAC---GGATGCGGTGGA 155009 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | || |||||||||||| || || ||||||||||| ||| ||||||||||||| Sbjct 155008 CGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGT 154949 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| || || || ||| ||||| | || | || ||||| || |||| |||| ||| Sbjct 154948 AGATACCGTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATT 154889 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATC 222481 || || || ||||| || || || || |||||| || ||| ||| || ||||| Sbjct 154888 GGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACATG 154830 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCGC 222536 || | ||| ||||| | || | |||||||||| || ||| | ||| |||| Sbjct 154829 AGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGC 154770 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGT 222593 | | || ||||| ||| || | ||| || | | || | ||| | |||| || | Sbjct 154769 A--TAAT---CATGTGCTGAGGTCGCTCGAC-GATCTTGCCGTTGAGTTTGAGA--AGAT 154718 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACC 222652 | ||| | |||||||||||||| |||||||| |||| || ||||||||| ||| || Sbjct 154717 ATGATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACG 154659 Query 222653 ACGGCGGCGTCCAGCTCCGACTTGTGCTT 222681 | ||||| ||| |||||| |||||| || Sbjct 154658 ATGGCGGAGTCAAGCTCCTCCTTGTGTTT 154630 >seq3 Length=584709 Score = 118 bits (130), Expect = 2e-21 Identities = 293/448 (65%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || |||||||||||||||||||| ||||| ||| | |||||| | | Sbjct 295223 AGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTTTGCGTCGA 295164 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||||||||| || || |||||||| || ||| || ||||| || ||| Sbjct 295163 TTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCT 295104 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | || |||||| | |||| ||| ||||| || ||| | ||| || ||| | Sbjct 295103 CCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTG--TTGCACTCGCATCTTAAGCA 295046 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 | | || |||| | | || | |||||||| || ||||| | || ||| | Sbjct 295045 CCGAGCC--AGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAA 294988 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 |||||| | ||||||||| || ||| |||| Sbjct 294987 GAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAG 294928 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTA 26234 ||||| ||||| | ||| ||||| | ||| | || || || || || | | || Sbjct 294927 CAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGGTAACGAAAAGGTATA 294869 Query 26235 CAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 || || | ||||| ||||| || ||||| ||||| || |||| || ||||| ||||| Sbjct 294868 CAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTT 294809 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| || ||| | || || || |||||| Sbjct 294808 CTTCGAGAAGCGAGTTGGAGAATATCAA 294781 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||| |||||||| || ||| |||||| ||||||||||| |||||| Sbjct 295681 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 295622 Query 25537 GCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591 |||||||| || ||| ||| || ||| | | |||||| | | || | ||| Sbjct 295621 TCCAAGGACTTGCACGATTGGAACAATCGTCTGAGCGACGACGAGAAATACTTCATATCA 295562 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | ||||||||||||| || ||||| || || || || || || || ||| Sbjct 295561 --CACATTCTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGC 295504 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | | || || ||| |||||| || ||||| || |||||||| | Sbjct 295503 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 295444 Query 25712 TCGAAAATGTGCACTCTGA 25730 | || ||| | |||||||| Sbjct 295443 TGGAGAATATTCACTCTGA 295425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815634273280