Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq92 190 1e-42 seq9 127 1e-23 >seq92 Length=127651 Score = 190 bits (210), Expect = 1e-42 Identities = 464/694 (67%), Gaps = 13/694 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| |||||||| ||||| | || |||||||| |||| ||||| Sbjct 100118 CGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGACTACG 100059 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| || || || || || || |||| | || | |||||| |||| Sbjct 100058 ATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGGCCCGT 99999 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| |||| ||||| || || || || | || || || | |||||| Sbjct 99998 TTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGACCGTGTTCTC 99939 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | || | || |||||||||| ||||| ||||| ||||| | || || ||||| || Sbjct 99938 ACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTTCCACC 99879 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTT-TCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 ||||||| || ||||| | | || || || || || ||| || || Sbjct 99878 CGAATTCCCCGTATCC-AGAAACTCATCTCCGACTACTTCAACGGCAAAGAGCCCAAC-- 99822 Query 475786 AAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| || || |||||||| |||||||| || || || |||||||| || ||||| | Sbjct 99821 AAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCTATCCTG 99762 Query 475844 TCAGGTCAA---TCAGACGAGAA-ACTAAATAA-TATTGTACTTGTTGACGTAACTCCAC 475898 || ||| | || | || ||||| || | |||| | ||||||| |||| Sbjct 99761 TCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGTCGCTCCTT 99704 Query 475899 TTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTC 475958 | || | ||| | || || | || || || ||||| || |||||| | | || || Sbjct 99703 TGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCGTAACACAA 99644 Query 475959 CTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAA 476018 | || ||| ||| || || |||| || || || | |||||| || || | || Sbjct 99643 CCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCCTGGGGTGC 99584 Query 476019 CCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTT 476078 |||||| ||||||| || || || | ||| || || || ||| | || | | Sbjct 99583 TCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGATGGGCAAGT 99524 Query 476079 TTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTG 476138 || | ||| || ||||| || |||||| | || |||||||| ||||||||||| |||| Sbjct 99523 TTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACCTTTG 99464 Query 476139 ATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || | || || |||||||| | ||||| |||| Sbjct 99463 ATCTCGACGCCAATGGTATCATGAATGTCTCTGC 99430 >seq9 Length=455495 Score = 127 bits (140), Expect = 1e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || || |||||||| || || || || ||||||| ||||| Sbjct 294241 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG 294182 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || || ||||||||||| || || ||||| || || ||||| || |||||| Sbjct 294181 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCT 294122 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| ||||||||||||| | | | || || Sbjct 294121 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGA-CCTCGAG 294063 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| ||||| Sbjct 294062 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 294024 Score = 107 bits (118), Expect = 1e-17 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 || ||||| || || ||||| | || ||||| || | || || || ||| || || Sbjct 294998 CGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGT 294940 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| || |||||||| ||||||||||| ||||| || |||||||| || || Sbjct 294939 GCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACC 294880 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || |||||||| ||||||| || || ||||||| | | | || ||| Sbjct 294879 CTCCTTATCCTGAATCTTAGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAA 294820 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||| || || || | ||||| || |||||||| Sbjct 294819 -GGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 294781 Score = 96.9 bits (106), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || ||| || || | | |||| Sbjct 294770 CGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 294711 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 294710 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 294651 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||||||||| || ||| || || ||||| | | | | ||| | Sbjct 294650 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAAT 294591 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | |||||| ||||| || || Sbjct 294590 GTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 294553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268071448131776