Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36 250 3e-61 >seq36 Length=226857 Score = 250 bits (276), Expect = 3e-61 Identities = 1155/1804 (64%), Gaps = 43/1804 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || |||| || | ||||||| ||| | |||| || | Sbjct 154687 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATCGT 154745 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| || || || |||| || Sbjct 154746 CGAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGA 154805 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || |||||||| ||| || |||||| |||| | | ||| ||||| |||| Sbjct 154806 ACGCGTTTTGGAGACTTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 154863 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| |||||||| || | ||| |||| || ||||| | | || Sbjct 154864 ACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATG 154923 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||| ||| Sbjct 154924 AAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 154983 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| ||||| || || || |||| | | |||| ||| ||| Sbjct 154984 ATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCC 155043 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| ||| | || || ||||| ||||||||||| || ||| ||| || Sbjct 155044 GGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCC 155103 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGG------GGTCCATC-GCGGTCTACTTGGA 75615 | || || | || ||||| | | | ||| ||| || ||||| | || Sbjct 155104 AGATACGTTGACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGA 155159 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || || | | || || ||||| || ||| ||||| || | ||||| Sbjct 155160 GCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA 155219 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || | | || ||||| | |||||||| ||||| |||||||||||||| || Sbjct 155220 AAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGT 155279 Query 75736 TGA--GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793 || ||| | || | ||| | || | ||||| || || || || || | || Sbjct 155280 CGAAAGGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGAT 155337 Query 75794 -GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAA 75852 || ||| ||||||||||| || |||||| |||||||| ||||| | | | Sbjct 155338 TGCTATGGC-GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCG 155396 Query 75853 TGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 |||| | | ||| | || | | ||| | | || ||| | | ||||| || || | Sbjct 155397 CAAGACTATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGG 155455 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | | || | |||||| ||||| ||||| || |||| |||||| ||||| || ||| ||| Sbjct 155456 GCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGG 155515 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 |||| || ||||| ||||| |||||||| || | |||||| | |||||| Sbjct 155516 GAACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGG 155575 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC-AATGAAGAGACTCGC 76090 ||||||||||| ||||| || | ||||| || | ||| | | | ||| || Sbjct 155576 TTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGACTACAAAGA-AGGC 155634 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 | || | | || || || || | || | | || | || || ||| Sbjct 155635 CGCTACGACTTCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAG 155694 Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 |||| || || ||| ||| ||||| || || || || |||||||| || Sbjct 155695 ATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGA 155754 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATT 76269 || || ||| | |||||||| ||||| || || | ||| || | || ||| | || Sbjct 155755 CCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTT 155813 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 || || || ||| ||| | || | || || || ||||| || ||||| | Sbjct 155814 CGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATTTTCGAGACCATTTACCACGCTGC 155873 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 |||| || | ||| |||| ||| ||||| |||| || || |||| || Sbjct 155874 CCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTC 155933 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA--AC 76447 |||||| || |||| || |||||||| || |||| |||| || || || || | Sbjct 155934 TCCCGCCTCGGAAGGTGTTCTTCAGTTCGACATGT-GGAATGTCAAGCC-TTCTGAGTTG 155991 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT-- 76505 | || ||||| | ||||| | |||||| || | ||| |||| ||| || || Sbjct 155992 TGGGAGTGGGACAACTTGAAGGAGCAGATCAAGCAGCACGGTATTCGCAAC--TCGTTGC 156049 Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 76565 || | || || ||||| || ||||| ||| | |||||| ||||||| ||||| ||||||| Sbjct 156050 TGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAACAATGAGTGCTTTG 156109 Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625 | |||||||| | ||||| |||| | | | | | || ||||| || | |||| Sbjct 156110 AGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCA 156169 Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685 || ||| |||| || ||| | || ||||| ||||| | | |||||| | | Sbjct 156170 ACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAACC 156229 Query 76686 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGA 76745 ||| | | | ||||||||||| || || | ||||||| | || |||||| Sbjct 156230 GCATCATTGCCGAGAACGGTTCCATTCAGAACATTCCCAATATCCCCGCCGACATCAAGG 156289 Query 76746 ATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805 ||||||| || || ||||| || | |||| || | |||||||| |||| Sbjct 156290 CTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATC 156349 Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGAT 76863 | ||| || || || | |||| ||| | || | |||| | ||| || || Sbjct 156350 GCGGTGCTTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTAT 156407 Query 76864 GTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGT 76922 | |||| || | |||||||| | || || ||||| ||| ||||| || || |||| Sbjct 156408 GGGCAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGT 156466 Query 76923 ACTA 76926 |||| Sbjct 156467 ACTA 156470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550867714560