Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq36 250 3e-61
>seq36
Length=226857
Score = 250 bits (276), Expect = 3e-61
Identities = 1155/1804 (64%), Gaps = 43/1804 (2%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
|||||||| |||| || || |||| || | ||||||| ||| | |||| || |
Sbjct 154687 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATCGT 154745
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
|| || ||| ||||| | ||||| || || |||| || || || |||| ||
Sbjct 154746 CGAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGA 154805
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322
|| |||||||| ||| || |||||| |||| | | ||| ||||| ||||
Sbjct 154806 ACGCGTTTTGGAGACTTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 154863
Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382
|| |||||||| |||||||| || | ||| |||| || ||||| | | ||
Sbjct 154864 ACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATG 154923
Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442
||||| ||| || |||||||||| | ||||| | | ||||| ||||| |||
Sbjct 154924 AAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 154983
Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502
|||||| ||||| || || || |||| | | |||| ||| |||
Sbjct 154984 ATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCC 155043
Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562
|| || || ||| ||| | || || ||||| ||||||||||| || ||| ||| ||
Sbjct 155044 GGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCC 155103
Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGG------GGTCCATC-GCGGTCTACTTGGA 75615
| || || | || ||||| | | | ||| ||| || ||||| | ||
Sbjct 155104 AGATACGTTGACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGA 155159
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675
|| ||||| || || | | || || ||||| || ||| ||||| || | |||||
Sbjct 155160 GCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA 155219
Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735
|| | | || ||||| | |||||||| ||||| |||||||||||||| ||
Sbjct 155220 AAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGT 155279
Query 75736 TGA--GGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793
|| ||| | || | ||| | || | ||||| || || || || || | ||
Sbjct 155280 CGAAAGGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGAT 155337
Query 75794 -GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAA 75852
|| ||| ||||||||||| || |||||| |||||||| ||||| | | |
Sbjct 155338 TGCTATGGC-GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCG 155396
Query 75853 TGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911
|||| | | ||| | || | | ||| | | || ||| | | ||||| || || |
Sbjct 155397 CAAGACTATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGG 155455
Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971
| | || | |||||| ||||| ||||| || |||| |||||| ||||| || ||| |||
Sbjct 155456 GCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGG 155515
Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031
|||| || ||||| ||||| |||||||| || | |||||| | ||||||
Sbjct 155516 GAACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGG 155575
Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC-AATGAAGAGACTCGC 76090
||||||||||| ||||| || | ||||| || | ||| | | | ||| ||
Sbjct 155576 TTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGACTACAAAGA-AGGC 155634
Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150
| || | | || || || || | || | | || | || || |||
Sbjct 155635 CGCTACGACTTCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAG 155694
Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210
|||| || || ||| ||| ||||| || || || || |||||||| ||
Sbjct 155695 ATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGA 155754
Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT-TTGTGCCGCTACGCATT 76269
|| || ||| | |||||||| ||||| || || | ||| || | || ||| | ||
Sbjct 155755 CCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTT 155813
Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329
|| || || ||| ||| | || | || || || ||||| || ||||| |
Sbjct 155814 CGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATTTTCGAGACCATTTACCACGCTGC 155873
Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389
|||| || | ||| |||| ||| ||||| |||| || || |||| ||
Sbjct 155874 CCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTC 155933
Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA--AC 76447
|||||| || |||| || |||||||| || |||| |||| || || || || |
Sbjct 155934 TCCCGCCTCGGAAGGTGTTCTTCAGTTCGACATGT-GGAATGTCAAGCC-TTCTGAGTTG 155991
Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT-- 76505
| || ||||| | ||||| | |||||| || | ||| |||| ||| || ||
Sbjct 155992 TGGGAGTGGGACAACTTGAAGGAGCAGATCAAGCAGCACGGTATTCGCAAC--TCGTTGC 156049
Query 76506 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 76565
|| | || || ||||| || ||||| ||| | |||||| ||||||| ||||| |||||||
Sbjct 156050 TGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAACAATGAGTGCTTTG 156109
Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625
| |||||||| | ||||| |||| | | | | | || ||||| || | ||||
Sbjct 156110 AGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCA 156169
Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 76685
|| ||| |||| || ||| | || ||||| ||||| | | |||||| | |
Sbjct 156170 ACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAACC 156229
Query 76686 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGA 76745
||| | | | ||||||||||| || || | ||||||| | || ||||||
Sbjct 156230 GCATCATTGCCGAGAACGGTTCCATTCAGAACATTCCCAATATCCCCGCCGACATCAAGG 156289
Query 76746 ATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805
||||||| || || ||||| || | |||| || | |||||||| ||||
Sbjct 156290 CTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATC 156349
Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGAT 76863
| ||| || || || | |||| ||| | || | |||| | ||| || ||
Sbjct 156350 GCGGTGCTTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTAT 156407
Query 76864 GTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGT 76922
| |||| || | |||||||| | || || ||||| ||| ||||| || || ||||
Sbjct 156408 GGGCAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGT 156466
Query 76923 ACTA 76926
||||
Sbjct 156467 ACTA 156470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596550867714560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |