Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 123 7e-23 seq19 109 2e-18 >seq3 Length=584709 Score = 123 bits (136), Expect = 7e-23 Identities = 324/488 (66%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 || ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 295278 AAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGC 295219 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTT 133569 | || ||||| |||| || |||||||| || ||||||||||| || ||| || ||||| Sbjct 295218 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGTGGTGCCTT-TGCGTCGATTTT 295160 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || ||||||||| | | || || || || |||||||||||||| || | Sbjct 295159 CTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCG 295100 Query 133630 GGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACT 133689 || |||| | ||||| || ||||| | | | ||||| | | ||| | | Sbjct 295099 TGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGC 295040 Query 133690 CAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTAT 133749 || ||| | | || | || || || | || || |||| |||||| || ||| | Sbjct 295039 CAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTT 294980 Query 133750 CAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATAT 133809 | ||||||||||| | | | || ||||| | || ||| ||| ||||| Sbjct 294979 GACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTAATGAAGCAATATAT 294920 Query 133810 TGAATTTGTAGCTGACAG---ATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTC 133866 ||||||||| || || | ||||| | || || ||| || ||| | ||| | Sbjct 294919 TGAATTTGTCGCCGATCGTCTATTGG--TTGCACTT-GGTAACGAAAAGGTATACAAAAC 294863 Query 133867 CGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 |||||| || ||||| | ||||||| |||| | | | ||||| || |||||||| Sbjct 294862 CGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGA 294803 Query 133927 G--GCGAG 133932 | ||||| Sbjct 294802 GAAGCGAG 294795 >seq19 Length=304147 Score = 109 bits (120), Expect = 2e-18 Identities = 221/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 149217 CCATCTTCGCCATACAAGAACTGAATGATGTC-TCCTAATGAGTTTCGCACAGTCCCATC 149159 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 149158 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 149102 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 149101 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 149042 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 149041 AAACTCGGTAGGAGTGAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 148982 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | |||| ||| ||||| || |||| || | || | |||| |||| ||||| Sbjct 148981 GGAGTAGTCGTCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAATGGAATACG 148922 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || ||||||| || Sbjct 148921 CTTGCCTTCCACAATCTGCTGACC 148898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471770229550544