Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq36 140 4e-27 seq8 131 2e-24 seq128 107 2e-17 seq3 98.7 1e-14 seq19 86.0 8e-11 >seq36 Length=226857 Score = 140 bits (154), Expect = 4e-27 Identities = 327/492 (66%), Gaps = 15/492 (3%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| |||||||| |||||||| | || |||||| Sbjct 155121 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 155062 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||||| || | ||| | ||||| ||| || | ||| || || Sbjct 155061 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 155002 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 155001 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 154942 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || |||| |||||||||| || || || || || || || || | || Sbjct 154941 GTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGT 154882 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || ||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 154881 ACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 154822 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 || | | ||||| | | | ||| || ||| ||| |||| || Sbjct 154821 AGTCTCCAAAACGCGTTCGA---TGTTGTC----TCCCCAA----ATA----CCGACCGC 154777 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTA 1630481 |||||||| | ||||| ||| || |||||||||| |||| | ||| || || Sbjct 154776 AACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATA 154717 Query 1630482 GGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGAT 1630541 || | || ||| ||| ||||||||| | || || || | ||||| | ||| Sbjct 154716 TGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGAT 154657 Query 1630542 GGCGGCGTCGAG 1630553 ||||| ||| || Sbjct 154656 GGCGGAGTCAAG 154645 Score = 87.8 bits (96), Expect = 2e-11 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421 ||||| || |||| ||||| || |||||| || |||| ||||| | ||| | | Sbjct 155357 TCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTC 155298 Query 1628422 CAGTCGCCA--CCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAA 1628479 || || || || || ||||| | || || || || ||||||| || | Sbjct 155297 CAATCCCCGTTCCTTTCGACGCGCTTC--ATGAAAAGATCTGGGATCCACAGAGCAAGGA 155240 Query 1628480 AGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGA 1628539 |||||||||| || ||||| || |||||||||||||||||| | || || |||| | Sbjct 155239 AGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAA 155180 Query 1628540 CAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGC 1628599 | ||| |||||||| ||||| |||||| ||||| || || ||||| ||||| Sbjct 155179 ACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGC 155120 Query 1628600 C 1628600 | Sbjct 155119 C 155119 >seq8 Length=487149 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || ||| |||| |||||| | ||||||||||||| Sbjct 370512 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACAGTGGCCAACATGA 370571 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 370572 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 370616 >seq128 Length=76602 Score = 107 bits (118), Expect = 2e-17 Identities = 119/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 19040 CCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 |||| | ||||||| ||||||||| ||||| ||||| ||||||| || | || || Sbjct 29879 CCAACACGACAGCACCGGCGGCACCGTGACCTGCGTCATCCGCAACGCCCCCTCTGGTCT 29820 Query 19100 CGGCGAGCCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCC 19158 ||||||||| ||| || |||||| |||| ||| ||| ||||||||||| || |||| Sbjct 29819 CGGCGAGCC-TGCGTTCGACAAGCTCGAAGCCCTCATCGGGCACGCCATGCTTTCCATCC 29761 Query 19159 CGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 | ||| |||||| ||||| || ||| ||||||| Sbjct 29760 CCGCCGTCAAGGGCTTCGAAATCGGC-TCGGGTTT 29727 >seq3 Length=584709 Score = 98.7 bits (108), Expect = 1e-14 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| ||||| |||||||| | | || || |||||| Sbjct 294785 TATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCCATG 294844 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| || ||||| ||||||| || || | | | || || Sbjct 294845 AAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGTGCAACCAATAGACGA 294904 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 ||||||||||| || || || || ||| || |||||||||||| | ||| || | Sbjct 294905 TCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGAGCACAC 294964 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 ||||| | |||| ||| |||||||| ||| || | || || ||| |||||| | |||| Sbjct 294965 GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATGATAT-CCTG 295023 Query 868940 G 868940 | Sbjct 295024 G 295024 >seq19 Length=304147 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 147923 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 147981 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 147982 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 148041 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 148042 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 148092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106933053516304