Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq36 230 2e-55 seq9 98.7 9e-16 >seq36 Length=226857 Score = 230 bits (254), Expect = 2e-55 Identities = 839/1300 (65%), Gaps = 54/1300 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| || |||||||| ||| | || | | || || ||||| | ||| || | Sbjct 156314 ATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATTG--GGAATGTTCT 156257 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| ||||| | ||||||||||| || ||||| |||| | ||| || | Sbjct 156256 GAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGACCCATAT 156197 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 156196 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 156137 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| ||||| || || | | Sbjct 156136 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGG 156077 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| || | || | || || || | |||||| ||||||| Sbjct 156076 TAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTGCTTGATCT 156017 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| | ||| |||||||| || ||| || |||||||| ||| ||| Sbjct 156016 GCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAACT 155957 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 155956 GAAGAACACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 155901 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | |||||| || ||| ||| || Sbjct 155900 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAAATGGTCTCGAAAATTTG 155845 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 155844 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 155786 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 |||| || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 155785 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 155730 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| ||||||||||| ||||| | || || |||||||| Sbjct 155729 GCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACGACCACT 155670 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | |||| | | | | | | | || ||||| ||| | |||| |||||||| | | Sbjct 155669 TGAGTCACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACGAAGGC 155611 Query 139062 -GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 | || | || | ||||| | |||||| || || || || || ||| | | Sbjct 155610 AGGCAG-------GGCAAGA---GAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCAC 155561 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 ||| || | || || | |||| |||| | || || || | ||||| || | Sbjct 155560 AGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGT 155501 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTG 139240 |||| || | ||| || ||||||||||| |||||| | || |||| ||||| || | Sbjct 155500 TGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGG 155441 Query 139241 TCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCG 139296 ||| | ||| | | | | | | || | || ||| || | | | Sbjct 155440 CCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCC 155385 Query 139297 TCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCG 139356 || ||||| ||||| |||||||| | || || || || ||| |||| || | Sbjct 155384 TCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCA 155325 Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| Sbjct 155324 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCCTTTCGACGCGCTTCATGAAA 155265 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG 139476 ||||| || ||||||| ||| | | | ||||| || || |||||| || | Sbjct 155264 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGG 155205 Query 139477 TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | || | ||| || ||||| ||||| |||||||| || || || ||||| || Sbjct 155204 TTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCA 155145 Query 139537 ATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||| || | | ||||| || || || |||| || ||| || ||||| ||| Sbjct 155144 AATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 155085 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGC 139633 || | ||| || | ||| | | ||| |||||||||| Sbjct 155084 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC 155045 >seq9 Length=455495 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| | ||||| ||| || | Sbjct 294550 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 294609 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || || || Sbjct 294610 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 294669 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| ||| |||| || || || Sbjct 294670 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 294729 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || || || |||| |||| || || Sbjct 294730 ATTCAGAAGGAGTCTACTCTGCATTTAGTCCTGCGTCTGCGGGGTGG 294776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883473215360