Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 127 3e-23 seq36 107 3e-17 seq3 105 1e-16 seq29 87.8 3e-11 >seq8 Length=487149 Score = 127 bits (140), Expect = 3e-23 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| || ||| | || |||||||| ||||||||| | | Sbjct 370512 CCAACTACCTCGACATCAAGCCCCTACTTGATGTTGGCTGCAAGACAGTGGCCAACATGA 370571 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 370572 TTAAGGGCAAGTCACCCGAAGAAATCCGCAAGACTTTCAACATCA 370616 >seq36 Length=226857 Score = 107 bits (118), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| |||||||| |||||||| | | |||||| Sbjct 155121 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTT 155062 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||||| || | ||| | ||| | ||| || | ||| || || Sbjct 155061 GGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 155002 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 155001 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 154942 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGA 2073758 || || |||| |||||||||| | || || || || || Sbjct 154941 GTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGA 154900 >seq3 Length=584709 Score = 105 bits (116), Expect = 1e-16 Identities = 180/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || ||| |||||| ||||| |||||||| | | Sbjct 294770 ACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAG 294829 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 294830 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGT 294889 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | | || || |||||||| |||||||| || || ||| || | |||||||||| Sbjct 294890 GCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATG 294949 Query 794073 CCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 || | ||| || ||| ||||| | |||| | | |||||||| ||| || | || || || Sbjct 294950 CCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTC 295008 Query 794132 GATGATGATCTGCCTGG 794148 | ||||||| | ||||| Sbjct 295009 GGTGATGATAT-CCTGG 295024 >seq29 Length=251928 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || ||||| ||| | || ||||| || ||| Sbjct 125596 GTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCATGCTTTGCAAGTTCTCCAGGCAA 125655 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||||| ||| || | ||||||||| ||||| | | |||||| Sbjct 125656 GATCAAGCGAACAGAGGTCTGGATTTCGCGAGAGGAAATCGTG 125698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915979187102768