Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 127 1e-24 seq9 109 4e-19 seq36 105 4e-18 >seq5 Length=531522 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| ||| |||| |||| Sbjct 177130 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 177189 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||||||||||||| | || | ||||||||||| Sbjct 177190 CTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 177249 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||| || |||| ||| || || Sbjct 177250 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 177309 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||||||||| || || || |||||||| Sbjct 177310 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq9 Length=455495 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||||||||| || || || || |||| | || Sbjct 294232 AGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCC 294173 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || |||||||| | || | || |||||||| Sbjct 294172 TCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 294113 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| || | || |||||| Sbjct 294112 TGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTC 294053 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| || ||||| |||||| Sbjct 294052 TTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 294020 Score = 105 bits (116), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| |||||||| || || ||||| || ||| | || |||| Sbjct 294533 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 294474 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || ||||| |||| ||| ||||| || | || | |||||||| || Sbjct 294473 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 294414 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| |||| ||| || Sbjct 294413 TGAATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 294358 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || | ||||| |||| || ||||| Sbjct 294357 GGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 294323 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 ||||| |||||||| ||||| ||||| || |||| | || ||||| ||||||||| Sbjct 294974 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 294915 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || || || |||||||||||||| | || | |||||||| || | || || |||| Sbjct 294914 GCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTAGATTTG 294855 Query 34901 ACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAG 34956 || || | ||||| ||| | ||||| || | ||| || |||||||| || | Sbjct 294854 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAA 294799 Query 34957 GGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| || ||||| Sbjct 294798 GGTCTTGACAAAAATTTGCAT 294778 >seq36 Length=226857 Score = 105 bits (116), Expect = 4e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| | || | || || || ||||| || ||||||| Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||| ||||| || | || | ||||||||||| | ||||| ||||| Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| || ||||| || | Sbjct 82855 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 82796 Query 34968 A 34968 | Sbjct 82795 A 82795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682828914928