Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq92 136 3e-26 seq19 87.8 1e-11 >seq92 Length=127651 Score = 136 bits (150), Expect = 3e-26 Identities = 450/694 (65%), Gaps = 13/694 (2%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| ||||| | ||||||||||| || | |||||| || |||||||| Sbjct 99421 TTTTCAACGGCAGAGACATTCATGATACCATTGGCGTCGAGATCAAAGGTAACTTCAATC 99480 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | |||| || || || || | | ||| | |||| || Sbjct 99481 TGAGGAACACCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATCAGGTTG 99540 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || ||| | ||| || ||||| || | ||||| || ||| || || Sbjct 99541 TTGTCCTTGGTGCGCTGTCGCTCGCCCTCAAAGACCTGGATGAGCACCCCAGGCTGGTTG 99600 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || ||| | || | || ||| ||| || || ||||| |||||||| | |||| Sbjct 99601 TCAGAAAAGGTCGAGAAAACTTCGGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATA 99660 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | || ||||| || ||||| || || || | ||| ||||| | ||||| ||| |||| Sbjct 99661 AGCTTCGTCATCATTCCACCGGCGGTCTCGATACCCAGAGACAAAGGAGCGACGTCAAGC 99720 Query 281717 AGGACAATATTTTG-AAGT----TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAA 281771 | |||| |||| | ||| || | ||| | |||| || ||||| || || | Sbjct 99721 A--ACAAGATTTCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGA 99778 Query 281772 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 281831 ||| ||||| || |||||||| |||||||| || | || | || | | ||| || | Sbjct 99779 CAGCGGCACCGTACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGT 99838 Query 281832 TGAAAAAATTTGAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTA 281888 |||| | | || | |||| ||| ||| ||||| || | || || ||||| | Sbjct 99839 TGAAGTAGTCGGAGATGAGTT-TCTGGATAC--GGGGAATTCGGGTGGAACCACCAACCA 99895 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 | ||||| ||||| || || ||||| || | || | || | ||| || || | Sbjct 99896 AGACAATCTCATGAACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAG 99955 Query 281949 GTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 | | | | || || | || ||||| |||||||| || | |||| || Sbjct 99956 GCTGGATGGTGGATCGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAG 100015 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | | |||| || || ||||| | || |||| ||||||||||| |||| | || Sbjct 100016 GGGTGTAGAAATCGATACCCTCGAATAGGGAGTCAATCTCAATCGTAGTCTGAGCTGCAG 100075 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 |||| || | || || |||||||| || || || Sbjct 100076 AAGAGAGGGTGCGCTTGGCACGTTCGCAAGCAGT 100109 >seq19 Length=304147 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 |||| || |||||||| || | |||| ||| |||||||||||||||||||| | || Sbjct 147575 TTGAAGGGCAAAGAAGGCCGACTGCGAGGCAATCTGATGGGAAAGCGTGTCGATTTTTCG 147634 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTC 432401 || ||||||||||||||| |||| | || | | ||| | ||||| || || || | | Sbjct 147635 GCCCGTACAGTTATTACTGGTGATGCCAACCTATCACTCCACGAAGTCGGCGTCCCACGC 147694 Query 432402 ATTATTGC 432409 | ||| || Sbjct 147695 AGTATCGC 147702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740507071415712