Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq36 264 1e-65 seq5 123 2e-23 seq9 111 2e-19 >seq36 Length=226857 Score = 264 bits (292), Expect = 1e-65 Identities = 1004/1551 (65%), Gaps = 65/1551 (4%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 156170 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 156111 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| || |||| ||| | || ||||||||| || | | Sbjct 156110 TCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 156051 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCG-CCCAGTCCCA 148438 |||| ||||||||| | |||| | | || || | ||||| || | |||| ||||| Sbjct 156050 AGCAACGAGTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCA-AGTTGTCCCACTCCCA 155992 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAA----TGCCGCGGCTAGCGG 148494 | | || || | || |||||||||||| |||| |||| | ||| ||| || Sbjct 155991 CAACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGC----GG 155936 Query 148495 GGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG- 148553 | ||||| | | | ||| || || ||| | ||||| || || | || Sbjct 155935 GAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTC 155877 Query 148554 AGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT 148613 || || ||| |||||| |||||| ||||||| |||||||| | | | | |||| Sbjct 155876 AGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCT-CACGGGC--CTCGGGA 155820 Query 148614 ---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 ||| | ||||| ||||| | ||| ||||||||||| ||||| || || || || Sbjct 155819 GACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCG 155760 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCG 148730 ||||| || ||| |||||| | ||| || ||| | || || |||||| ||| Sbjct 155759 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCG 155700 Query 148731 ATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCG 148790 |||||||||| || || || || ||||| | || | | | ||| | || ||| Sbjct 155699 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCG 155640 Query 148791 TAC---------TTGTCATCTACGATG-CATCGGTTCACGGCGATAGAGGCTAGATTGCA 148840 || |||| || |||| | || || || ||| | |||||| | ||||| Sbjct 155639 TAGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCA 155584 Query 148841 CACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCA 148897 || || |||||| ||||| | |||||| | |||||| | ||||||||| ||||| Sbjct 155583 AACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCG 155524 Query 148898 TTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCAT 148957 || | |||| || || || |||||||| |||||||| || || ||||||||||| Sbjct 155523 AATGGTT---CCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCAT 155467 Query 148958 GTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCG 149017 | || ||| ||||| ||| | || | ||| | || | ||| || || Sbjct 155466 AAAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACG 155407 Query 149018 CA----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAA 149071 | ||||| || || ||||| |||| || | ||| | |||| || || Sbjct 155406 AATAGTCTTGCGGCCA----CGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAA 155353 Query 149072 CGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACAC 149131 | ||||||| |||||||| | || || ||||||| || || |||||||| | ||| | Sbjct 155352 CTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATC 155293 Query 149132 GCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTC 149191 |||| | | ||||||||||| || ||||| || | ||| || || | |||||| Sbjct 155292 CCCGTTCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTC 155233 Query 149192 GCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTC 149251 ||| || | ||||| ||| ||| |||| | || | | || | ||| Sbjct 155232 GCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTC 155173 Query 149252 CGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTC 149308 |||||||| ||||| | ||| | || | || || ||| |||||||||||||| Sbjct 155172 TGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTC 155113 Query 149309 GACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCC 149368 |||| | | ||||||| || || |||| ||| || ||||| ||| || || Sbjct 155112 AACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACC 155053 Query 149369 GTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC 149428 ||| || | |||| | |||| || || | ||| ||||| | |||||| || Sbjct 155052 GTTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACC 154993 Query 149429 GCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 || ||| | ||| ||||| || ||| ||| || |||||| || || |||| Sbjct 154992 ACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGC 154934 Query 149488 TGTCGCGCTTCATGGTCAGC-AGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCG 149543 ||||| |||||| |||| | || || || || ||| || || | | || || Sbjct 154933 TGTCGTCCTTCAT-GTCAACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCA 154878 Query 149544 GCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGA 149602 || ||| | || || |||||| || || | || |||| ||| | | ||| | Sbjct 154877 GCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG-ACATGAGGTGGTAAGT 154819 Query 149603 CTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATG 149662 ||| | ||||| || |||| || || || || | || |||||||| | ||| || Sbjct 154818 CTCCAAAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTG 154759 Query 149663 CTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTT 149722 ||| |||||||| | | ||| | |||||| | || | || || ||||| Sbjct 154758 CTGAGGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTT 154699 Query 149723 GTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 | |||||||||| | |||| ||||| | | ||| | | ||||||| ||| Sbjct 154698 GAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTC 154648 Score = 107 bits (118), Expect = 2e-18 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| |||||| ||||||||||| ||| | || Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAGAT 82915 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | |||||||| || || || ||||| |||||||| ||| || ||||| | || Sbjct 82914 CAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTC 82855 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| ||||| |||||||| || ||||| Sbjct 82854 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 82795 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 82794 A--CTGAATGGTGTATT 82780 >seq5 Length=531522 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 177137 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 177195 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| || |||||||| || || ||||| |||||||| ||| Sbjct 177196 CTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 177255 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 177256 CTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 177315 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 177316 CGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq9 Length=455495 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| ||||||||||||||| || Sbjct 294217 GTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 294158 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || ||||| ||||||||||| ||||| |||| Sbjct 294157 GCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTTCGACTTG 294098 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || || | | ||| || |||| || | ||| |||||||| || || Sbjct 294097 ACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 294038 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| || ||||||| Sbjct 294037 TTGACGAAGATTTGCATGG 294019 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | |||||||| Sbjct 294755 AAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCA-TCCTCGAG 294697 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||| ||||||||||| || || ||||||||||| || || Sbjct 294696 CTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT 294637 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | || || || || | || | || ||||| Sbjct 294636 CTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCC 294577 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 294576 AGTCAAAGTCTTGACGAAGATCTGCAT 294550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405620586880