Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq36 109 1e-18 >seq36 Length=226857 Score = 109 bits (120), Expect = 1e-18 Identities = 213/309 (69%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGA 110745 |||| ||| | | ||||||||| ||||||| | ||| || | || || || |||| Sbjct 155072 TTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAATAAGC 155131 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || ||| ||||||||||||| ||||| |||||||| |||| | ||||| || | | Sbjct 155132 GACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTG 155191 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || || || || || |||||| | | || || || | || ||| ||| Sbjct 155192 ATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGT 155251 Query 110866 GGATTTCAGATTTATTCATGAAACGTGT-TCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 |||| ||||| | |||||||| || || ||| || || || ||| | || |||||| Sbjct 155252 GGATCCCAGATCTTTTCATGAAGCGCGTCGAAAGGAACGGGGAT-TGGACCCTCATGTGT 155310 Query 110925 CCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 || || || | ||||| || ||||| ||||| | |||||||| | || ||||| Sbjct 155311 CC-CAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGA 155369 Query 110984 AAAATATGA 110992 || ||||| Sbjct 155370 GAAGTATGA 155378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186774602430032