Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9 100 7e-16 >seq9 Length=455495 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || || |||||||| ||| || || Sbjct 294553 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCGGAT 294612 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 294613 ACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAGCAG 294672 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || |||||| | || ||||| | |||||| |||| ||||| | Sbjct 294673 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATATT 294732 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 294733 CAGAAGGAGTCTACTCTGCA 294752 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || || || |||||||| ||| |||||| || | Sbjct 294786 TTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCTGATACCAT 294845 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || || |||||||| || || || || || || ||| ||| |||| Sbjct 294846 CGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAACGACT 294905 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| ||||||| || | || || ||| |||||| ||||||| Sbjct 294906 TATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATCCAGAA 294965 Query 206358 AGA 206360 || Sbjct 294966 GGA 294968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181782763097552