Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq36 251 7e-62 seq5 89.7 5e-13 seq3 82.4 7e-11 >seq36 Length=226857 Score = 251 bits (278), Expect = 7e-62 Identities = 1002/1546 (65%), Gaps = 61/1546 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 156170 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 156111 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | || | ||||| |||||| || | | Sbjct 156110 TCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGC 156051 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | ||| | |||||||| | | ||| |||||| Sbjct 156050 AGCAACGAGTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCAC 155991 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| | || |||||||||||| |||| || || ||| ||| ||||||| Sbjct 155990 AACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGA--GGCGGGAG 155933 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG-AG 147188 ||| ||| |||| |||| || | || || | ||| ||| || | || || Sbjct 155932 AGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 155875 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG--ACGGTCGCTTCTTCGCTC 147246 || | | ||| ||||| ||| ||||| ||||| || |||| || || | Sbjct 155874 GGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 155817 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| | ||| || ||||| | |||||| | ||| || ||||| Sbjct 155816 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATG 155757 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 |||||||| ||||||| | || || || ||||| || |||||| ||| | Sbjct 155756 GGTCGATGTCGCATGTTGCTGT--TGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGA 155699 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || | Sbjct 155698 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT 155639 Query 147425 AAGTCCCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | || |||| | ||| | ||| || || ||| | ||| |||| ||||| Sbjct 155638 AGCGGCCTTCTTTGTAGTCGACGAAGGCA--GG--CAGGGCAAGAGAGGCCAAGTTGCAA 155583 Query 147481 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCAT 147537 || || ||| || | | | | ||||| | ||| || | |||||| || ||||| Sbjct 155582 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGC-- 155525 Query 147538 TTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATG 147597 ||| ||||| ||||| ||| ||||| |||| ||||| || |||||| | ||||| Sbjct 155524 -GAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATA 155466 Query 147598 TACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGC 147657 | || ||| || ||| || | || | ||| | || | ||| || || Sbjct 155465 AAGGGGTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGA 155406 Query 147658 ACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCG 147717 | || || |||||||| || ||| |||||| | ||||||||| ||| Sbjct 155405 ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCG 155346 Query 147718 CCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 || |||||||| || ||||| || |||| | |||||||| || | ||| ||| | Sbjct 155345 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTC 155286 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG---- 147833 | ||||| ||| || ||||| || | |||||| || | || ||||| Sbjct 155285 CTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 155226 Query 147834 CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893 || ||| | |||| | || | || || ||||| ||| | | | | | ||| || Sbjct 155225 CGGTTTTC-TTCCTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACGTCTGC 155170 Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950 |||||| || || | ||||| || | ||||| ||| || ||||||||||| || Sbjct 155169 GTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAAC 155110 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 | | | ||||||| || ||||| | |||||| | |||| | | || ||||| Sbjct 155109 GTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTT 155050 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 |||| || | |||| ||| || | ||| ||||| | ||| || || || Sbjct 155049 GGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACC 154990 Query 148071 -GCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGC 148126 ||| | ||| || |||||| | | | | |||| |||||| ||||| |||| Sbjct 154989 AGCCAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATGC 154934 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA-AT--CCGCGTTCCCG 148183 |||||| || | | ||| | ||||| ||| ||| || || || | || || | Sbjct 154933 TGTCGTCCTTCATGTCAACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAG 154877 Query 148184 CCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGT 148241 | ||| || || || ||||| || || | || | || ||| | | | || || Sbjct 154876 CGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAAGT 154819 Query 148242 CTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTG 148301 ||| | | || |||||||| ||| || ||| || | ||| |||||||| | |||||| Sbjct 154818 CTCCAAAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTG 154759 Query 148302 CTGTGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTT 148360 ||| ||||| ||| | | |||| ||||| |||||||||||| | || || || | Sbjct 154758 CTGAGGTCGCTCGACGATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCT 154700 Query 148361 TGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || | |||||||| | || | || ||| ||||| ||||||| Sbjct 154699 TGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGC 154654 >seq5 Length=531522 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| ||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 177121 ACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 177180 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 177181 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCC 177240 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 177241 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 177300 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || ||||| | |||||||||||| Sbjct 177301 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq3 Length=584709 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 47056 GCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG-CA 47114 |||| || | |||||||| || | ||| ||||| || | || |||||||||| || Sbjct 294998 GCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCA 294939 Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAGCTCGGACA 47173 || | ||| |||||||||| ||||| || |||||||| |||| |||| || || | Sbjct 294938 CACT-AATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCA-CTTGG-TA 294882 Query 47174 ACCGAAA--TATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAG 47231 || ||| ||| || | | || || || || || ||| | |||||||| | | Sbjct 294881 ACGAAAAGGTATACAAAACCGC-CAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 294823 Query 47232 GGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 ||||| || || || |||||||| ||||| ||||| ||| Sbjct 294822 GGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATAT 294784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596234408320