Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq36 111 2e-18 seq3 86.0 9e-11 >seq36 Length=226857 Score = 111 bits (122), Expect = 2e-18 Identities = 202/293 (69%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| | | |||||| || | || || ||||| || || || || || | Sbjct 154830 CATGTC-CAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCC 154888 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| || || || || || | |||||||||| ||| || || || |||| Sbjct 154889 AATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGCATTGACGGTATCT 154948 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| || || | ||||||||| ||| || || ||||| || || Sbjct 154949 ACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG 155008 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| | ||| | ||| | || ||||||||||| ||||||||| Sbjct 155009 TCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACGGTACATCCAACGGCA 155068 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | | |||||||||||||| || ||| |||| || | ||||| |||||| || Sbjct 155069 TCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGC 155121 >seq3 Length=584709 Score = 86.0 bits (94), Expect = 9e-11 Identities = 200/295 (68%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACG-ATGCTCGTCAACAAGCCGTCGAC 1456506 ||||||||| |||||||| |||||| | || || || | || | |||| | | Sbjct 295092 GGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGCCAGCAAG 295033 Query 1456507 CGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGA 1456566 | | | ||| | | |||||| ||| || || | || ||| |||||||| | | ||| Sbjct 295032 CAAATTATCCAGG-ATATCATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGA 294974 Query 1456567 GTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | | |||||| || ||| | ||||||||||||| | || ||| || || |||||| Sbjct 294973 GGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCA-CACTAATGAAGCAATATATTGAA- 294916 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 ||||||||||| || || | | || || || | || ||| ||| || ||||| Sbjct 294915 TTTGTCGCCGATCGTCTATTGGTTGCACTTGG-TAACGAAAAGGTATACAAAACCGCCAA 294857 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| ||| | |||||| || || | | |||||||| ||||| |||||| Sbjct 294856 CCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAG 294802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177568912982944