Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36 206 4e-48 >seq36 Length=226857 Score = 206 bits (228), Expect = 4e-48 Identities = 912/1430 (64%), Gaps = 48/1430 (3%) Strand=Plus/Minus Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| ||| ||||| || |||||||| | ||| ||||| || | || || || ||| Sbjct 155873 GCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCG 155814 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || | | | || ||| || || || | |||||||| |||| |||||| ||| Sbjct 155813 AAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGT 155754 Query 69127 CTATGTCTCTTATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAAT 69185 | ||||| | | || | || | ||| || ||| || |||| || | ||| || || Sbjct 155753 CGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGAT 155695 Query 69186 TTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCG 69245 || || || || ||||| || |||| | ||| || | || || | || || | || Sbjct 155694 CTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCG 155635 Query 69246 TCCATCTATA------ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTAC 69299 || ||| | || || | ||| || | ||| || | || ||||| || || Sbjct 155634 GCCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAAC 155575 Query 69300 CTCATTAGAATTTGCA---TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGT 69356 ||||| || ||| || | || ||||| || || |||||| | || || Sbjct 155574 CTCATCAGGG---GCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGT 155518 Query 69357 CCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGT 69416 |||||||||| ||| || ||||| |||| ||||| || ||||| || ||||| || | Sbjct 155517 TCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTT 155458 Query 69417 ACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGT 69476 || ||||| |||| | |||| || || | ||| | | ||| || || Sbjct 155457 GCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA---GT 155401 Query 69477 CTTGTA---ACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCC 69531 |||| ||| ||| ||||| || | ||| | |||| || || || || || Sbjct 155400 CTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCA 155343 Query 69532 CAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCC 69591 | |||| ||| ||||| || || || |||||||| | | ||| | | | ||| Sbjct 155342 TAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT--TCC 155285 Query 69592 TTA--ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTC 69649 || || || ||||| || ||||| || ||||| ||||| | ||||| || | | | Sbjct 155284 TTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCAC 155225 Query 69650 TATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCC 69709 |||||||| || || || ||| | ||| ||||| || | | || | |||| Sbjct 155224 GGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCC 155165 Query 69710 ATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATC 69769 | || || || || || || | | || ||||| ||||| || ||||| || | ||||| Sbjct 155164 AAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATC 155105 Query 69770 TGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTC 69829 |||||||||| || |||| | ||||| ||||| || || || ||| |||| || || | Sbjct 155104 TGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGC 155045 Query 69830 CAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCA 69889 | | ||| ||| || | || || || | | || || || || |||| Sbjct 155044 CGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCA 154985 Query 69890 TTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTA 69949 | || ||||| | ||||| || | ||||| || ||||| || ||||| || || Sbjct 154984 TCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCT 154925 Query 69950 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATG 70009 |||||| || || |||||| ||||| ||| || || || || || || | || Sbjct 154924 TCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTG 154865 Query 70010 TAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATT 70069 |||| || ||||| ||||| || || | || | ||| || || | | | || Sbjct 154864 TAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTT 154805 Query 70070 CTATAT------CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || | |||| ||| || | ||| || ||||| | ||| |||||||||| Sbjct 154804 CGATGTTGTCTCCCCA------AATACCGACCGCAACGCGCATAATCATGTGCTGAGGTC 154751 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 | || || | || || | ||| | || |||||| | |||||||| || || |||| Sbjct 154750 GCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAA 154691 Query 70184 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATT 70243 | || | || |||||||| ||||| | || | || | || | ||||| | || Sbjct 154690 AGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTT 154631 Query 70244 TGGTAACTATATC-CATAACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTA 70299 | | || || || | || ||||| || || || || | |||| || Sbjct 154630 TCATGACGCACTCGTATGTCTGT-TTCGAGATCATTGGCGAGGCACGCT---CATTCTTG 154575 Query 70300 GGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTG 70359 || || ||||||| | ||| ||| | ||| | | | ||||| || | |||| Sbjct 154574 GGGTTGACATAGTGGTATAGATCGCTGACAACAGCCGACCACTGCTTTTTAGTCTGCTTG 154515 Query 70360 TGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 || || || || | ||| || | ||| || ||||||||||| || ||||| Sbjct 154514 TGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 154465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887231063680