Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=584709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 204/297 (69%), Gaps = 11/297 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||| || || || | || || || ||||| || ||||| | ||| || Sbjct 295681 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 295622 Query 43790 ACTAAAGACTTAGCAC-ATTGGA----TTGCATTAAA-ACCACAAGAAAAACATTTTATA 43843 | || ||||| |||| |||||| | | | | || || ||||| || || ||| Sbjct 295621 TCCAAGGACTT-GCACGATTGGAACAATCGTCTGAGCGACGACGAGAAATAC--TTCATA 295565 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || |||| || |||||||| ||||| || ||||||||||| ||| || Sbjct 295564 TCACACATTCTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAG 295505 Query 43904 CGGTTT-GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 || || ||| || ||||| | || || || || || || ||||| || || || Sbjct 295504 CGTTTCAGCGGC-GAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCAT 295446 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || |||||||| || |||| || ||| ||||| |||| ||||||||||| Sbjct 295445 GATGGAGAATATTCACTCTGAAACATATTCTCTCCTGATCGATAGCTACATCAAAGA 295389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAA 44479 ||||| ||||||||||||| | || |||||| || | | | ||| ||| ||| || Sbjct 294933 ATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTTGCACTTGGTAACGAAAAG 294874 Query 44480 CACTATATTGTACAA--AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 |||| || ||||| || ||||| ||||| || ||||| |||| ||||| | Sbjct 294873 G--TATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGA 294816 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||||||| || || || || |||||||||||||| Sbjct 294815 CAAACTTCTTCGAGAAGCGAGTTGGAGAATATCA 294782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443831884560