Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36 259 6e-64 >seq36 Length=226857 Score = 259 bits (286), Expect = 6e-64 Identities = 1163/1808 (64%), Gaps = 51/1808 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 156470 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 156412 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGC 110485 | ||| || ||| | |||| | ||| | ||| |||| |||| || || Sbjct 156411 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAAGCA 156354 Query 110486 CCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAG 110545 || || | || ||||| | || |||| | ||| |||||||| || ||| Sbjct 156353 CCGCGATCGGCGGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAG 156294 Query 110546 AGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACC 110605 ||| |||||| || | ||||||| | || ||||| |||||||| | | | Sbjct 156293 AGAGCCTTGATGTCGGCGGGGATATTGGGAATGTTCTGAATGGAACCGTTCTCGGCAATG 156234 Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| | | |||||| | | ||||| ||||| || | ||| || |||| ||| Sbjct 156233 ATGCGGTTCTTCATGGCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAG 156174 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 |||||| | || ||||| || | | | | | |||| ||||| | |||||| Sbjct 156173 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 156114 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||| ||||| ||||||| |||||| | ||| ||||| || ||||| || || Sbjct 156113 GGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCG 156054 Query 110786 ATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | || || || ||| |||| ||| | || |||||| | ||||| | ||||| | Sbjct 156053 AGCAGCAACGA--GTTGCGAATACCGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACT 155996 Query 110844 CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGC 110901 | | | || || || || |||| ||||||| |||||||| || |||| || || Sbjct 155995 CCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAACTGAAGAACACCTTCCGAGGC 155938 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 |||||| |||| ||||| |||| ||||| ||| |||| ||| || | || Sbjct 155937 GGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTG 155879 Query 110962 -CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||||| ||||| || ||||| || || || | || | ||| ||| || | Sbjct 155878 TCAGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAG 155819 Query 111021 AATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 | || || | ||| || | || ||| | || || ||||| |||||||| | ||| Sbjct 155818 ACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCG 155760 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 || |||| |||||||| || || || || ||||| ||| ||| || || Sbjct 155759 ATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCG 155700 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| || || | || | | || | || || || || | | || Sbjct 155699 ATGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCG 155640 Query 111200 AAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | || ||| | | | ||| | || ||||| | || ||||| |||||||| Sbjct 155639 TAGCGGCCT-TCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAAC 155581 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | |||||| | || || || || | || || || ||| Sbjct 155580 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAAT 155521 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||| || ||||| |||||| ||||||| ||||| ||||| ||||| |||| Sbjct 155520 GGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGG 155461 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAA 111437 | ||||| || ||||| | | ||| || | | ||| | | || | ||| | || Sbjct 155460 GTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG---AA 155405 Query 111438 TGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | | || |||| || ||||| ||| ||||| |||||| || ||||||||||| Sbjct 155404 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTC-G 155346 Query 111495 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 ||| || || | || || || || || ||||| | || | ||| | || | | Sbjct 155345 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAAT--CCCCGT 155288 Query 111554 TCC--TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTAC 111611 ||| || || |||||||||||||| ||||| |||||||| | ||||| || | | Sbjct 155287 TCCTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 155228 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || ||||| | || ||||| ||| || ||||| || || | | || |||| Sbjct 155227 CACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGT 155168 Query 111672 GCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATTT 111724 |||| ||||| || ||| | ||| || || ||| | | ||||| || | Sbjct 155167 GCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCC----TGGTCA 155112 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 || || | || ||| ||| || ||||||||||| ||||| || || | ||| ||| Sbjct 155111 ACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCG 155052 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || ||| ||| |||| | | |||| || || || ||||| Sbjct 155051 TTGGTGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCA 154992 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || | Sbjct 154991 CCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTG 154932 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| || | | ||||| || |||| ||| | || |||||||| ||| Sbjct 154931 TCGTCCTTCATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTG 154872 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 112022 ||||| || |||| ||||| ||| | | |||| |||||| || ||| ||||||| Sbjct 154871 AAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAAGTCTCCA 154814 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | || || |||| || || || |||| || || ||||| | ||||| ||| | Sbjct 154813 AAACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAG 154754 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 112141 | || | || |||| | ||| ||||||| | || |||| || || |||| Sbjct 154753 GTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAAG 154695 Query 112142 CCAAAGTA 112149 |||||||| Sbjct 154694 CCAAAGTA 154687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012279795200