Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq36 260 2e-64 seq3 104 3e-17 >seq36 Length=226857 Score = 260 bits (288), Expect = 2e-64 Identities = 1131/1770 (64%), Gaps = 29/1770 (2%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 156508 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 156449 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 156448 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 156389 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||| | ||||| || ||||| || || ||||| || ||||| | || | Sbjct 156388 GAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCATCTGGATAA 156329 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 ||| | || ||||| |||||| ||||||| ||| || || | ||||||| Sbjct 156328 CATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 156269 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 118101 || || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 156268 TGGGAATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCAG 156212 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 |||| ||||| || | |||||||| | ||| ||||| || || |||| Sbjct 156211 ACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 156152 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 156151 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 156092 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| |||||| | || ||||| ||||||||||| || | || | ||| || | || Sbjct 156091 CCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 156032 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 118339 | | | | | || | ||||| | |||||| || | | || | || | Sbjct 156031 CGTGCTGCTTGATCTGCTCCTTCAAGTTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 155974 Query 118340 CTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 118399 | |||||| || ||||| || | ||||| || || || || |||| || || || Sbjct 155973 ATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 155914 Query 118400 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTTT 118458 ||||| | | | |||| || || | || ||||| ||||| || || || | Sbjct 155913 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAAATGGTCT 155855 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | ||||| | || | | ||||||| || || || | | || || | | Sbjct 155854 CGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 155796 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 155795 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 155736 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| ||| | ||| ||| || |||||| | | | || || || | | Sbjct 155735 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGACG 155676 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 118696 || || | || | || || ||||| | | | || | | || ||| | | | ||| Sbjct 155675 ACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 155617 Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756 | ||| ||||| | || |||| || || |||| |||||| || ||| Sbjct 155616 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTA 155557 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 ||| || || |||||||||| || || || |||||| |||| || || || || Sbjct 155556 CTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCT 155497 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 ||| |||| || ||||| ||||| ||||| | || | ||||| || || |||| || Sbjct 155496 CTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGCCTC 155437 Query 118877 GAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCT 118935 ||| || | | ||||| | || | || | | ||| | | | || ||||| || Sbjct 155436 GAGGATGGAGTACCAGAGCTTCTGG-GCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 155378 Query 118936 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 118995 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 155377 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACT 155318 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCT--CAACCCGCTTCATGAAGAGGTC 119053 | || || | ||| | ||| | || | |||| | || ||||||||||| || || Sbjct 155317 CGTTGGGACACATGAGGGTCCAAT--CCCCGTTCCTTTCGACGCGCTTCATGAAAAGATC 155260 Query 119054 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 119113 ||||||||| || || |||||| || ||| || |||||| | || || || Sbjct 155259 TGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTT 155200 Query 119114 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 119173 ||||| || | |||||| | | || |||||||| || || ||||| | || | || Sbjct 155199 TCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGC 155140 Query 119174 CCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAG 119230 || || | || |||||| || || || |||||| ||| || || ||||| Sbjct 155139 ACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAG 155080 Query 119231 CATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCT 119290 ||| |||||||| || | |||| || || || || ||| ||| |||| | Sbjct 155079 CATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTGGCACG 155020 Query 119291 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGT 119350 || ||||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 155019 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 154960 Query 119351 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 119410 |||| || ||||||| || || || ||| |||| | | | ||||| ||| || Sbjct 154959 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAACTAGGAAACAGGAAGA 154900 Query 119411 CATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC 119470 || ||| ||| ||||||||||||||||| || |||| |||||| ||| | | | Sbjct 154899 CAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGC 154842 Query 119471 TTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 ||| |||||| || ||| |||||||| ||| |||| || || ||||||| Sbjct 154841 TTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGTCTCCCCAAATACCG 154782 Query 119529 ATCGAGACCCGCATAAACATGTATTGGGGT 119558 | || || ||||||| ||||| || ||| Sbjct 154781 ACCGCAACGCGCATAATCATGTGCTGAGGT 154752 >seq3 Length=584709 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 295073 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCG 295132 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 295133 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCACTGAAGAAGATG 295192 Query 130136 CCCTCCACACACGCGAACGC 130155 ||||||||| ||||| || Sbjct 295193 CCCTCCACAGCAGCGAAAGC 295212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415781134720