Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36 235 6e-57 seq3 111 2e-19 >seq36 Length=226857 Score = 235 bits (260), Expect = 6e-57 Identities = 1110/1739 (64%), Gaps = 43/1739 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | |||||||| || |||||||| || || |||| || || Sbjct 154753 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGAACGCGTT 154812 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||| ||| || |||||| |||| | | ||| ||||| |||| || |||| Sbjct 154813 TTGGAGACTTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCTACACTCT 154870 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || | || |||| || ||||| | | || ||||| | Sbjct 154871 TCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACG 154930 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||| ||| ||||| Sbjct 154931 ACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTG 154990 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || |||| | | |||| ||| ||| || || | Sbjct 154991 GTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCA 155050 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| ||| | || || ||||| ||||||||||| || ||| ||| || | || | Sbjct 155051 ACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACG 155110 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGT------CTATCTTGAGCCATGG 104632 | | || ||||| | | ||| || || ||| | ||| || ||||| ||| Sbjct 155111 TTGACCA----GGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGG 155166 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| || | | || || ||||| ||||| ||||| || | || || || Sbjct 155167 CACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG- 155225 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| ||||| |||||| ||||| ||||| |||||||| ||||||||| | || || Sbjct 155226 TGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAG 155285 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || || ||||| | ||| | ||||| || || ||||| || | ||| | || Sbjct 155286 GAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGG 155345 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACGG 104870 ||||||||||| || || ||| ||||| ||| || || || ||| | ||| Sbjct 155346 CGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTA 155404 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | | || | || | | ||| | | || ||| || | || ||||| || || | || Sbjct 155405 TTCGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGGGCAACCCC 155463 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| |||||||| ||||| ||| ||||| || || || ||| |||| || Sbjct 155464 TTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGGGAACCATT 155523 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || || ||||| || || || ||| | || | | | |||||| ||||| Sbjct 155524 CGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTT 155583 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGA 105108 || ||| | || || | || || || | || || | | | | || | | | || Sbjct 155584 TGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTCGA-CTACAAAGAAGGCCGCTACGA 155642 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | || |||||||| || || || ||| | ||||| |||| | || || Sbjct 155643 CTTCCAGAAGCTCCACGAGGTGACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATCGA 155702 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || ||||||| ||||| ||||| || || ||| |||| || || || || Sbjct 155703 TGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGG 155762 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||||||||| || || | | ||| | || || ||| | || || || Sbjct 155763 TGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTC 155821 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||| || || |||| || || || |||||||| || ||||| || || | Sbjct 155822 CCGAGGCCCGTGAGCTCAACAAGCAAATTTTCGAGACCATTTACCACGCTGCCCTGACAG 155881 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| |||| | | | || || || ||||| |||| ||||| || | Sbjct 155882 CCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCT 155941 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACG 105461 | |||| || ||||| || || |||| |||| || |||| |||| | | Sbjct 155942 CGGAAGGTGTTCTTCAGTTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGG 155995 Query 105462 ACTGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 | ||||| | || | ||||| | |||||| || | ||| |||| ||| | || | Sbjct 155996 AGTGGGACAACT-TGAAGGAGCAGATCAAGCAGCACGGTATTCGCAACTCGTTGCTGCTC 156054 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 ||||| ||||| || ||||| ||| | |||||| ||||||| ||||| |||||||| || Sbjct 156055 GCTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAACAATGAGTGCTTTGAGCCA 156114 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 105640 |||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 156115 TACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCC 156174 Query 105641 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 105700 ||| | | || ||| || || ||||| ||||| | | |||||| | | ||| Sbjct 156175 TGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGTCTGATGCCATGAAGAACCGCATC 156234 Query 105701 GTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTG 105760 | | | ||||||||||| || ||| |||| || || || ||| | Sbjct 156235 ATTGCCGAGAACGGTTCCATTCAGAACATTCCCAATATCCCCGCCGACATCAAGGCTCTC 156294 Query 105761 TACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 105820 ||| || |||||||| || | |||| || | |||||||| ||||| ||| Sbjct 156295 TACAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCCGCCGATCGCGGT 156354 Query 105821 CGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCA 105878 || || || | |||| ||| | || | |||| | ||| || ||| || Sbjct 156355 GCTTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCA 156412 Query 105879 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 105937 || || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 156413 AGATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 156471 >seq3 Length=584709 Score = 111 bits (122), Expect = 2e-19 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 94885 ||| ||||| ||||||||| |||| |||| |||| | |||| |||||||||||||| | Sbjct 295201 TGTGGAGGGCATCTTCTTCAGTGGTGCCTT-TGCGTCGATTTTCTGGCTCAAGAAGCGTG 295143 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 |||| ||||| || ||| |||||| ||||| |||||||| ||||| ||||| | ||| Sbjct 295142 GTCTGATGCCCGGCCTCACCTTCTCTAACGAACTTATCTCCCGTGATGAGGGTTTGCACA 295083 Query 94946 AAGAGTTTGC 94955 ||| ||||| Sbjct 295082 CAGACTTTGC 295073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242485610880