Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq92 201 3e-46 seq9 185 3e-41 seq19 98.7 3e-15 seq5 98.7 3e-15 seq36 95.1 4e-14 >seq92 Length=127651 Score = 201 bits (222), Expect = 3e-46 Identities = 490/736 (67%), Gaps = 15/736 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || ||||| || ||||| || || ||||| || ||| | | | |||| | Sbjct 100943 CCGCTGTTGGTATCGACTTGGGTACCACGTACTCTTGCGTGGCTATCTATCGCGATGACC 100884 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | ||||| ||| | ||||| || |||||| |||| || ||||| | || ||||| | Sbjct 100883 GATGCGAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCA 100824 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 || || |||||| ||||||| ||| |||| || ||||| | ||| || || | | Sbjct 100823 ATGACACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACA 100764 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--- 349432 | || || || || || ||||| | ||||| | ||||| ||| | || | | Sbjct 100763 ACACCGTCTTCGACGCCAAGCGTTTGATTGGCCGCAAGTTC----GACGA-TCCAGAGGT 100709 Query 349433 -CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAAT 349491 || ||||| | || || ||||| || | || || |||| | || ||||| | Sbjct 100708 CCAGGCTGATATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGC---AAACCTTT 100652 Query 349492 TATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 | ||||||||| ||||| ||| | || |||| ||| || ||||| || || || Sbjct 100651 GGTCAAGGTTGAATTCAAAGGCGAAGAGAAGGAATTCACACCTGAGGAAATATCTTCCAT 100592 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 | | | | || ||| || ||||| || | | ||| || | | || | | || Sbjct 100591 GATCCTCATCAAGATGCGCGAGATTGCCGAGGGCTTTTTGGGCACACCGGTCCCGAACGC 100532 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 ||| | ||||| || ||||| || || || | ||||| || || || || || || Sbjct 100531 TGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGG 100472 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 | ||||| || | || || || | || || || || || ||||| || || ||||| Sbjct 100471 TCGTATTGCCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGC 100412 Query 349732 ATATGGGCTTGATAAAATGAGT-GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 || || || || || | ||| || || ||| | || ||||| ||| |||||| Sbjct 100411 CTACGGTCTCGACAAGAA-AGTCGAGGGTGAGCGCAATGTCCTGATTTTCGATCTAGGTG 100353 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 ||||||| || ||||| || || || ||| |||| ||||| || || || || || | | Sbjct 100352 GTGGTACCTTCGATGTGTCTCTCCTCACAATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 100293 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | || ||||| || || | ||||| || || || ||||| || || ||| || |||| Sbjct 100292 CCGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGATAACCGCCTTGTTAACCACTTTG 100233 Query 349911 TTAAAGAATTTAAGCG 349926 | || ||||| ||||| Sbjct 100232 TCAACGAATTCAAGCG 100217 Score = 136 bits (150), Expect = 1e-26 Identities = 458/707 (65%), Gaps = 11/707 (2%) Strand=Plus/Minus Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 ||||||| || | ||||| || |||||||| ||||| || | || ||| | | || | Sbjct 100123 TGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCTCAGA 100064 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | | ||||| ||||| || || || || | ||||||| | ||||||| || | Sbjct 100063 CTACGATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACCCGGG 100004 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || ||||| | || ||||||||| || | || || | ||||| || | Sbjct 100003 CCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGACCGTG 99944 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | | || || || || |||| ||| || |||| | || || |||||||||| Sbjct 99943 TTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGTGGTT 99884 Query 350205 CTACACGTATTCCAAAAGT-TCAACAGTTACT-ATCT--GAGTTTTTTAATGGCAAAGAA 350260 | || || ||||| || || ||| ||| |||| || | || || |||||||| Sbjct 99883 CCACCCGAATTCC--CCGTATC--CAGAAACTCATCTCCGACTACTTCAACGGCAAAGAG 99828 Query 350261 CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCT 350320 || | || || || || ||||| |||||||| || ||||| ||||| ||||| || Sbjct 99827 CCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTGCT 99768 Query 350321 ATTTTATCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACT 350377 || | ||||| | | ||| || | | | || | || | || || || || Sbjct 99767 ATCCTGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGTTGCTTGACGTCGCT 99708 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 || | || || || | || || | |||| | | ||||| |||||||| | || Sbjct 99707 CCTTTGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCGTAAC 99648 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | || | || || || |||||| || ||| || || ||| | || || ||||| | | Sbjct 99647 ACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCCTGGG 99588 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || || || || ||||| || || || ||||| || || || || | || Sbjct 99587 GTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGATGGGC 99528 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 | ||| || | || ||||| || || | || ||||||||||||||||| | Sbjct 99527 AAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGTTACC 99468 Query 350618 TTCGATATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || ||| | || | |||||||| | ||||| | || |||||||| Sbjct 99467 TTTGATCTCGACGCCAATGGTATCATGAATGTCTCTGCCGTTGAAAA 99421 >seq9 Length=455495 Score = 185 bits (204), Expect = 3e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | ||| ||||||||||| || |||||||| | Sbjct 294784 TTTGCATACCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGT 294725 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| ||||| || || || || ||||||||||| || || ||||| | Sbjct 294724 AGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 294665 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| ||||| ||||| |||| ||||||||||| |||| ||| || | Sbjct 294664 CAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGG 294605 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||| | ||||| ||||| || || | || || || || |||||||| Sbjct 294604 ATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 Score = 167 bits (184), Expect = 7e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | ||||| || ||||| || ||||| || ||||| || | Sbjct 294255 TTTGCATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGT 294196 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || || || || |||||||| ||||||||||| ||||| | Sbjct 294195 AATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGT 294136 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || |||||||| || |||||||| || | || ||||| ||||| | |||||| | Sbjct 294135 CAGGGGGGATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACG 294076 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || |||| ||||| ||||| || || || || || || ||||| Sbjct 294075 ACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 294021 Score = 129 bits (142), Expect = 2e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || || ||||| || || ||||| ||||| || || |||||||| |||||||| || Sbjct 294941 GTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATA 294882 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || ||||||||||| |||| ||| ||||| || || | |||||| | ||| ||||| Sbjct 294881 CCCTCCTTATCCTGAATCTTAGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCC 294822 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||| |||||||| || | || || |||||||| ||||| Sbjct 294821 AAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 294778 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || ||||| || || || || || ||||| || || Sbjct 294552 CATACCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTC 294493 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || || || ||||| || || | || ||||||||||| Sbjct 294492 GGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGG 294433 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || | || ||||| || || | || || | || Sbjct 294432 AGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTC 294373 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| | || || |||| || ||||| Sbjct 294372 GACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACAACTAT-TGCAT 294323 >seq19 Length=304147 Score = 98.7 bits (108), Expect = 3e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||| ||||| ||||| || || ||||| | ||| || | |||||||||||| |||||| Sbjct 149871 ACACCGGCAAAATGGAACGTGTTCAGAGTCATTTGCGTGGCGGGCTCACCAATAGACTGC 149812 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 ||||| | |||||| |||||||| ||||| |||||| Sbjct 149811 GCTGCCAGAACGCCGACCATTTCACCAGGGCTGACAA 149775 >seq5 Length=531522 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 140574 GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATT 140633 || || ||||| || || || || ||||||||||| || |||||||| || || ||||| Sbjct 177179 GTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATG 177238 Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 || || || ||||| || || | || || || || || | || || | || || ||| Sbjct 177239 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 177298 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | ||||| || || || ||||| || ||||||||||| Sbjct 177299 AGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq36 Length=226857 Score = 95.1 bits (104), Expect = 4e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || || || | ||||| || || ||||| || || ||||| ||||| Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||||||||| ||||| || || || || || ||||| | || ||||| || Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 |||| || || | || || ||||| || | ||||| || || || || || || ||| Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 82794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515205631537136