Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 219 5e-52 seq225 98.7 1e-15 seq3 84.2 2e-11 >seq36 Length=226857 Score = 219 bits (242), Expect = 5e-52 Identities = 377/543 (69%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | ||| ||| || |||||| | || || || |||||| Sbjct 154816 GAGACTTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTCAAC 154875 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 |||||||| || |||| |||| ||| ||||| || | |||||||| ||| Sbjct 154876 GCTGGTACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGC 154935 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || ||||| |||||||| || |||||| |||||| ||||||||| | | |||||| Sbjct 154936 ATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGTGGT 154995 Query 53423 ATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | || ||||||| | |||| | || || || |||| Sbjct 154996 ATCGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACG 155053 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | || | || ||| | || ||||| ||||||||||||||||| ||| | ||||| Sbjct 155054 GTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTG 155113 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || ||||| || | || || |||||||||||||| |||||||| | Sbjct 155114 ACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAG 155173 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGT 53659 || | | || ||||| || |||| ||| || || | ||||| | || ||| || Sbjct 155174 ACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCG-TGCTCGC 155232 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||||||||| || || || |||||| | || || | | ||| | Sbjct 155233 GACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAGGAACGGG 155292 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 || ||| ||| ||||| || ||||||||||| ||||| | | ||| || |||||| Sbjct 155293 GATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTATGGCGAGGAG 155352 Query 53780 TTT 53782 ||| Sbjct 155353 TTT 155355 Score = 109 bits (120), Expect = 6e-19 Identities = 302/452 (67%), Gaps = 21/452 (5%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||| | || || ||||| ||||| || || | || ||| |||| ||| Sbjct 156037 CGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATCCTGGGTAAC 156096 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || ||||| |||||| ||||||| |||| |||||| | | || ||||| Sbjct 156097 AATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAA 156156 Query 55604 TTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 || || | || ||| | | ||| ||||||| || | || ||| Sbjct 156157 TTC--CAGG-TCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTTTGGT-- 156211 Query 55661 CCGCAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGG 55712 | | | || |||| || || |||| |||||| ||| | ||||| || Sbjct 156212 CTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGT---TCCATTCAGAACATTCCCA 156268 Query 55713 AGATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | || || | || | |||||| | ||| ||| || ||||||||| | ||| | Sbjct 156269 ATATCCC-CGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCAT 156327 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 | || | ||| || ||||| ||||| | ||||||||||||||||| || ||| | Sbjct 156328 GTTATCCAGATGGCCGCCGATCGCGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACGTT 156387 Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 |||| || ||||| | ||| |||| | | ||| ||||||||| || |||||| | Sbjct 156388 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 156447 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| |||||||| |||| || Sbjct 156448 GGTCTCAAGACGGGCATGTACTACTTGCGCAC 156479 >seq225 Length=35679 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || |||||| | || || | ||||| ||||| |||||||| || || | || || Sbjct 10208 CGGGTGAAGGTATAACGAGGACTGGCAGCATCGGAACCACCTGCGAGACGGGAACCGAAG 10149 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || ||||| |||| |||| ||||||| || | || ||||| ||||| Sbjct 10148 TTACCGCTTGGCTCCAGGATATTGATATTGTTGGATCCAATAAAGTTCTGTGCCAAGCCG 10089 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | |||||| ||||| || |||||||||||||| || |||||||| | || || Sbjct 10088 ATAATCGTCTGTTGCAGCGAGGCCTCACCGTGGTGATATGCAGTCTGCTCAGAGACATAA 10029 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || || | | | | ||||| | ||| | ||| || ||| | || ||||| | Sbjct 10028 CCAGCGAGTTCCACAACCTTTTTATCCTTGACCAGATTTCGCTTAAAGCAAGCGTAGAGA 9969 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| ||||| |||||||||||||| | ||| || || |||||| || |||| Sbjct 9968 ACCTTTCGCTGACCAGGTTTCAAACCGTCAATGACGGACGGGATAGAACGCATGTTGTC 9910 >seq3 Length=584709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 230/342 (67%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 130871 GTCGTCCACTTTGCAGCGCAGTCATTTGTGGATCTGAGTTTCGAGCAGTCGTTCCAGTTT 130930 ||| | || ||||| |||||||| |||||| ||||||| | | |||| | ||| Sbjct 105636 GTCATGCATTTTGCTGCGCAGTCTCATGTGGACTTGAGTTTTGGAAACTCGTACAGTTTT 105577 Query 130931 ACACGGGACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAG 130990 || | | ||| ||| || || || || | || |||| || | ||| | || | Sbjct 105576 ACCCACGCCAACGTGTATGGGACGCACGTTTTGCTGGAGA--GTGC-CAAGAA-GGTTCG 105521 Query 130991 ATTCAG-CGTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGT---TGATGGTCA 131046 | |||| || ||| | ||||| ||||| ||||||||||| || || || | | | Sbjct 105520 AATCAGACGCTTCATACACGTATCTACGGATGAGGTGTACGGAGAAGTGAAGGAGGATGA 105461 Query 131047 CG-TGACGTGTGACGAGACGGCAGCA--TTAAACCCAATGAATCCCTACGCGGCAAGCAA 131103 || |||| || | ||| | ||| | || ||||| ||| || ||||| || ||||| Sbjct 105460 CGATGACTTG-GTCGAATC--CAGTATCTTGTCCCCAACGAACCCATACGCAGCGAGCAA 105404 Query 131104 AGCGGCTGCTGAGCTCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCAT 131163 ||| || ||||| | ||||| | |||| |||| ||| ||| || || |||||| Sbjct 105403 AGCAGCGGCTGAAATGCTTGTCCAATCTTACAACAAGAGCTTCAAGCTCCCAACCATCAT 105344 Query 131164 TACACGCGGAAACAACGTGTTTGGGCCGAAGCAATACCCGGA 131205 | || | |||||||||| ||||||| | || || || || Sbjct 105343 TGTTCGAAGCAACAACGTGTATGGGCCGCACCAGTATCCCGA 105302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198817417600