Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 >seq5 Length=531522 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| |||||| || || ||||||||||| || ||||| || || Sbjct 177116 CCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 177175 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| || | || || |||||||| || Sbjct 177176 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGA 177235 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | || ||||| |||||| Sbjct 177236 ATGCCCTCCTTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 177294 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| ||||| || || || | ||||| || ||||||||||| ||| Sbjct 177295 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTG 177346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719964553296