Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 seq36 114 1e-20 >seq9 Length=455495 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||||||| | |||||||| || || || ||| Sbjct 294019 CCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGT 294078 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||| | ||||| || ||||| ||||| ||||| || || || || | Sbjct 294079 CTGATACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACC 294138 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| |||| | ||| || || || | || ||| | || |||| ||||||| Sbjct 294139 AGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACA 294198 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || | ||| | || | || ||||| || Sbjct 294199 ACATTCAGAAGGAGTCAACACTTCACCTCGTTCTCCGCCTTCGAGGTGGTAT 294250 >seq36 Length=226857 Score = 114 bits (126), Expect = 1e-20 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 26981 ATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA 27040 |||| |||| ||| | | || || |||||||| |||||| | || || ||||| || || Sbjct 82781 ATACACCATTCAGTT--TCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGA 82838 Query 27041 ACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC 27100 | || ||| |||| || | ||||| ||||| |||||||| || ||||| || || Sbjct 82839 GTCCTCGGACACGATCGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCC 82898 Query 27101 CGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGA 27160 ||||| ||||| || || | ||| ||||| || | || ||| || ||| | ||||| Sbjct 82899 TGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGA 82958 Query 27161 TTACAACATTCAAAAGG 27177 ||||||||||| |||| Sbjct 82959 CTACAACATTCAGAAGG 82975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434904743562240