Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 seq9 150 4e-31 seq36 116 9e-21 >seq5 Length=531522 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || ||| ||| || |||||||| || || ||||| Sbjct 177121 ACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 177180 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || ||||| || ||||| ||||| || |||| || Sbjct 177181 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCC 177240 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| || || ||||| || Sbjct 177241 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 177300 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||||| |||||||| || || || || | |||||| || Sbjct 177301 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 177345 >seq9 Length=455495 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || ||||| || || ||||| ||||| | ||| || Sbjct 294241 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG 294182 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || |||||||| || || || |||||||| || | |||| Sbjct 294181 CGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCT 294122 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || || || || ||||| || ||||||||| Sbjct 294121 TCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGA 294062 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| ||||| || || | ||||| Sbjct 294061 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 294021 Score = 149 bits (164), Expect = 1e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||||| || || ||||| || || || | ||||| | |||||| Sbjct 294533 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 294474 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || | || || || |||||||| | || ||||| ||| Sbjct 294473 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 294414 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| ||| || ||||| || ||||| ||| Sbjct 294413 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 294354 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| || | |||||| |||| Sbjct 294353 TTTCCGGTCAAAGTCTTGACAA 294332 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || | |||| || || |||||||| || || || || | || ||| Sbjct 294989 AGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 294930 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || || ||||| ||||| ||||||||||| | || ||||| ||| Sbjct 294929 TCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCC 294870 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || |||||||| ||||| ||| || || | || || ||| Sbjct 294869 TGAATCTTAGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTC 294810 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| ||||| | ||||| Sbjct 294809 TTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 294778 >seq36 Length=226857 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 82973 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 82914 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || || ||||| |||| || |||||||| ||||| || || || || ||| Sbjct 82913 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 82854 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 82853 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 82795 Score = 91.5 bits (100), Expect = 3e-13 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | || || ||||||||||| ||| ||||||||||||| || ||||| Sbjct 155518 TTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGT 155459 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | ||| || | || ||| |||| ||| | ||| |||| |||||| || | ||||| Sbjct 155458 TGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCT 155399 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | | || ||| ||| ||||| | |||||| |||| || ||| |||||| Sbjct 155398 TGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGC 155339 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC- 178324 |||| | || || || ||| ||||| || | ||| |||| | |||| | | ||| Sbjct 155338 AATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT-TCCTTTCG 155280 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 || || |||||||| || || | | |||| Sbjct 155279 ACGCGCTTCATGAAAAGATCTGGGATCCA 155251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159114692692880