Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 7e-13 >seq3 Length=584709 Score = 89.7 bits (98), Expect = 7e-13 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||| | ||| |||| || | ||| ||| |||| ||||||||||| || || Sbjct 295389 TCTTTGATGTAGCTATCGATCAGGAGAGAATATGTTTCAGAGTGAATATTCTCCATCATG 295448 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| ||||| || || || | || || | | ||| ||||| | || || ||| Sbjct 295449 ATCTGGAATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCA 295508 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| || ||||| || || || ||| ||||||||| ||||| | | ||| || Sbjct 295509 AGCAAGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAGAATGTGTGATATG 295568 Query 48582 AAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCT 48638 || ||||| |||| | ||| | || ||||| || | | || || || | ||| Sbjct 295569 AAGTATTTCTCGTCGTCGCTCAGACGATTGTTCCAATCGTGCAAGTCCTTGGACAGATCG 295628 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || ||||| || || || || || || |||||||| | ||| || Sbjct 295629 ATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 295681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646987399680