Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq36 206 4e-48 >seq36 Length=226857 Score = 206 bits (228), Expect = 4e-48 Identities = 784/1221 (64%), Gaps = 26/1221 (2%) Strand=Plus/Minus Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 ||| ||| ||||| || |||||||| | ||| || || || | || || || || Sbjct 155873 GCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCG 155814 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 || || | | | || ||| || || || || |||||||| |||| ||| || ||| Sbjct 155813 AAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGT 155754 Query 76130 CTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATT 76189 | ||||| | | ||| | ||| || ||| ||||||| || | ||| || || Sbjct 155753 CGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATC 155694 Query 76190 TTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTT 76249 || ||||| || | ||| || |||| | ||| || | || || | || || | Sbjct 155693 TTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGG 155634 Query 76250 CCATCTATC------ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACC 76303 || ||| | || || | || || | ||| || | || ||||| || ||| Sbjct 155633 CCTTCTTTGTAGTCGACGAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACC 155574 Query 76304 TCATTAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 |||| || |||| || | || ||||||||||| |||||| | || ||| Sbjct 155573 TCATCAGG---GGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTT 155517 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTT 76420 || ||||||| ||||||||||| |||| || | || || || || | ||| || | Sbjct 155516 CCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTG 155457 Query 76421 CCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGAT 76480 || ||||| |||| | |||| || || | ||||| | ||| | | |||| Sbjct 155456 CCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTC 155400 Query 76481 TTGTATC---GCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCC 76535 ||| | | ||| | ||||| || | ||| | | || ||||| || || || Sbjct 155399 TTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCAT 155342 Query 76536 AAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCT 76595 | |||| ||| ||||| || || || |||||||| | | ||| || || | |||| Sbjct 155341 AGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT--TCCT 155284 Query 76596 TA--ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCT 76653 | || || ||||| || ||||| || ||||| ||||||| || || || || | | Sbjct 155283 TTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACG 155224 Query 76654 ACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCA 76713 |||||| || || |||||| | ||| || || || | | || | ||||| Sbjct 155223 GTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCA 155164 Query 76714 TGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCT 76773 || || || || || || | |||| ||||| ||||| || ||||| || | ||||| Sbjct 155163 AGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCT 155104 Query 76774 GGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCC 76833 ||||||||| || | || | | ||| ||||| |||||||| |||||||| || || || Sbjct 155103 GGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCC 155044 Query 76834 AGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCAT 76893 | ||| ||| || ||||| || | | ||| || || || ||||| Sbjct 155043 GGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT 154984 Query 76894 TTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCAT 76953 || ||||| | |||||| || | ||||| ||||| || || || || || ||| | Sbjct 154983 CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTT 154924 Query 76954 CATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGT 77013 ||||| || || |||||| ||||| ||| || || || || || || | ||| Sbjct 154923 CATGTCAACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGT 154864 Query 77014 AGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTC 77073 ||| || || || ||||| || || | || | ||| || || | ||| ||| Sbjct 154863 AGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTC 154804 Query 77074 TATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTAC 77133 || | | ||| || || || || ||||| | ||| ||||||||||| || || Sbjct 154803 GATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGAC 154744 Query 77134 AGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 77193 |||| || | ||| | | |||||| | |||| ||| || || ||||| || | Sbjct 154743 GATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTG 154684 Query 77194 GTATGAAAAGTCTCTTTCGTA 77214 || |||||||| ||||| Sbjct 154683 ATAGTTGAAGTCTCTGTCGTA 154663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912013859840