Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq9 129 4e-25
seq5 127 1e-24
seq36 86.0 5e-12
>seq9
Length=455495
Score = 129 bits (142), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || |||||| || ||||||||||| | || ||| |||| ||
Sbjct 294229 ACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 294170
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||| || | || | |||||||| |||
Sbjct 294169 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGA 294110
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | || || || | || || ||||| | ||||| ||||
Sbjct 294109 ATCTTCGACTTGACATTGT--CAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCT 294052
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| || ||||||||||| |||||||||||||||
Sbjct 294051 TGCCGGTGAGGGTCTTGACGAAGATTTGCATG 294020
Score = 120 bits (132), Expect = 2e-22
Identities = 147/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| ||| ||||| ||||| ||||| |||| ||| || | || |||
Sbjct 294530 ACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 294471
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || ||||| ||||||||||| | ||| | ||| ||||| |||
Sbjct 294470 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 294411
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | |||||||||| ||| || ||||| | || || ||||
Sbjct 294410 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCT 294353
Query 44307 TTCCCGTGAGGGTCTTCAC 44325
|||| || | ||||| ||
Sbjct 294352 TTCCGGTCAAAGTCTTGAC 294334
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| |||| ||| | | ||| || || | ||||| ||||| ||||||||||| |||
Sbjct 295004 CCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTC 294945
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| ||||||||||| |||||||| || | || ||||| || | |||
Sbjct 294944 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGG 294885
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||| ||||| ||| ||||| || || ||| | ||||| || | ||||| |
Sbjct 294884 ATACCCTCCTTATCCTGAATCTTAGATTTGACATTGT--CGATGGTATCAGAAGATTCGA 294827
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||| ||||| |||||||| || | |||||| || || ||||||||
Sbjct 294826 CTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 294778
>seq5
Length=531522
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| ||| || ||||||||||| ||||||||||| ||| || ||| | ||
Sbjct 177130 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 177189
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| |||||||| || |||||||| | || ||||| || | || | || ||||| ||
Sbjct 177190 CTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 177249
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| ||||| ||| | | | |||||||||| || |||||||| | || |||||
Sbjct 177250 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 177309
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||||||| || ||||| || |||||
Sbjct 177310 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342
>seq36
Length=226857
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| |||| || || |||| || |||||||| || || ||||
Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| ||||||||||| | || | || ||||| || || || ||| || |||
Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | || || ||||| ||||| || ||||| ||
Sbjct 82855 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 82798
Query 44326 GAA 44328
|||
Sbjct 82797 GAA 82795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359979378893904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |