Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 129 4e-25 seq5 127 1e-24 seq36 86.0 5e-12 >seq9 Length=455495 Score = 129 bits (142), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | || ||| |||| || Sbjct 294229 ACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 294170 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | |||||||| ||| Sbjct 294169 AGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGA 294110 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || || || | || || ||||| | ||||| |||| Sbjct 294109 ATCTTCGACTTGACATTGT--CAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCT 294052 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||||||| ||||||||||||||| Sbjct 294051 TGCCGGTGAGGGTCTTGACGAAGATTTGCATG 294020 Score = 120 bits (132), Expect = 2e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| ||||| ||||| |||| ||| || | || ||| Sbjct 294530 ACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 294471 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| ||||||||||| | ||| | ||| ||||| ||| Sbjct 294470 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 294411 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| ||| || ||||| | || || |||| Sbjct 294410 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCT 294353 Query 44307 TTCCCGTGAGGGTCTTCAC 44325 |||| || | ||||| || Sbjct 294352 TTCCGGTCAAAGTCTTGAC 294334 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | | ||| || || | ||||| ||||| ||||||||||| ||| Sbjct 295004 CCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTC 294945 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| |||||||| || | || ||||| || | ||| Sbjct 294944 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGG 294885 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| ||||| || || ||| | ||||| || | ||||| | Sbjct 294884 ATACCCTCCTTATCCTGAATCTTAGATTTGACATTGT--CGATGGTATCAGAAGATTCGA 294827 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||||| |||||||| || | |||||| || || |||||||| Sbjct 294826 CTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 294778 >seq5 Length=531522 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| || ||||||||||| ||||||||||| ||| || ||| | || Sbjct 177130 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 177189 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || |||||||| | || ||||| || | || | || ||||| || Sbjct 177190 CTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 177249 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||| | | | |||||||||| || |||||||| | || ||||| Sbjct 177250 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 177309 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| || ||||| || ||||| Sbjct 177310 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 177342 >seq36 Length=226857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| |||| || || |||| || |||||||| || || |||| Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| ||||||||||| | || | || ||||| || || || ||| || ||| Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | || || ||||| ||||| || ||||| || Sbjct 82855 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 82798 Query 44326 GAA 44328 ||| Sbjct 82797 GAA 82795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979378893904