Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15]
2,512 sequences; 38,775,191 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq5 154 4e-32
seq9 152 1e-31
>seq5
Length=531522
Score = 154 bits (170), Expect = 4e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| ||||| ||||| || || ||||||||||| |||||||| || |||
Sbjct 177339 CAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 177280
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || || || ||||||||||||
Sbjct 177279 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 177220
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 177219 CGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 177160
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 177159 CAGAAGGA 177152
>seq9
Length=455495
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || || || |||||||| || || ||
Sbjct 294024 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCTGAT 294083
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 294084 ACTATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGAATCCCCCCTGACCAGCAG 294143
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| |||||||| || || | |||||| | ||||| ||| |
Sbjct 294144 CGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAACATT 294203
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || |||||||| || || |||
Sbjct 294204 CAGAAGGAGTCAACACTTCACCTCGTT 294230
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || | || ||||| || || ||| | || || ||| || ||
Sbjct 294781 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCTGAT 294840
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || |||||| ||||||||||| || || || |||||||| |||||||||
Sbjct 294841 ACCATCGACAATGTCAAATCTAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAA 294900
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||||||| || |||||||| ||||| ||||| || | || || ||| || ||| ||
Sbjct 294901 CGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAACATC 294960
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||| || ||||||| ||
Sbjct 294961 CAGAAGGAAAGCACTTTGCATCTCGT 294986
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || ||| | || ||||| || |||||||| ||||| || ||| |||||||||||
Sbjct 294334 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 294393
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| ||||| ||||||||||| || || || |||||||| || ||||| ||| | ||
Sbjct 294394 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 294453
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
||||| || || ||||| |||||||| | || || |||| || || |||| || |||
Sbjct 294454 TTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATCCAGAAGGAA 294513
Query 178113 TCAACACTGCATCTTGT 178129
|| || || || || ||
Sbjct 294514 TCCACCCTTCACCTCGT 294530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203692457911328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |