Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008065.1_202015-05-15] 2,512 sequences; 38,775,191 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 156 4e-33 seq36 120 3e-22 seq9 104 2e-17 >seq5 Length=531522 Score = 156 bits (172), Expect = 4e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 177112 ACCACCACCACGAAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 177171 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | |||||||| | || ||||||||||| || || || || || || || ||||||| Sbjct 177172 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGTTGCTGGTCCGG 177231 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| || |||||||||| ||| || ||| ||| | | | |||||| |||| Sbjct 177232 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 177290 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| | || ||||| || ||||| || || || |||||||||||||| || Sbjct 177291 CCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 177345 >seq36 Length=226857 Score = 120 bits (132), Expect = 3e-22 Identities = 138/184 (75%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| |||||||| ||||| || |||| || ||||||||||| ||||| | Sbjct 82975 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 82916 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| || || | ||||| || ||||||||| |||||| ||| || | Sbjct 82915 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 82856 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 82855 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGAC 82798 Query 41851 GAAA 41854 |||| Sbjct 82797 GAAA 82794 >seq9 Length=455495 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| || || || || ||||| |||| ||||||||||| || ||||| Sbjct 294212 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 294153 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | ||| | | ||||||||| ||| | || | | || Sbjct 294152 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC-TGAATCTTCGACTTGACAT 294094 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||| || |||||| ||||| | || || || || || || || ||||| | Sbjct 294093 TGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 294034 Query 41850 CGAAAATCTGCATG 41863 |||| || |||||| Sbjct 294033 CGAAGATTTGCATG 294020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | |||||| || |||||||||||| || |||||||| Sbjct 294776 CCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 294717 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| || || || || || ||||| ||||| | |||| Sbjct 294716 AAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGA 294657 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||| | | ||| | || | ||| || || | || || || || Sbjct 294656 ATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCG--ATCGTATCCGAGGATTCA 294600 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 294599 ACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 294550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462289483654400