Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3515 105 1e-17 seq3562 89.7 1e-12 >seq3515 Length=139295 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || || || ||||| || ||||| ||| | || ||| Sbjct 85262 GGCATGAACGCCACACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTT 85321 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || |||||| |||| || |||||||| | |||||||| | || |||||| |||| Sbjct 85322 GCTCTTGGTAACGAAAAGGTGTACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 85381 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||||||||| || || || | || ||||||| | |||| Sbjct 85382 TCCTTGGGTGGCAAGACAAACTTCTTCGAGAAACGAGTTGGAGAATATCAGAAGGCTGGC 85441 Query 230632 GTGATG 230637 || ||| Sbjct 85442 GTTATG 85447 >seq3562 Length=52523 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| |||||| |||||||||| |||||||| || ||| | ||||| || Sbjct 34304 GTCGTCACCGTTGGCATATCGCCATTGGAGGTACTGGTTCGGAGTCTTCTCAAGGTGCAT 34245 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| | ||| | | ||| ||||| | |||| | | |||| || ||||||||| Sbjct 34244 CTCCACGTGCTCCAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTC 34185 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || | || |||||| ||| || ||||||| ||| ||||||||| || || Sbjct 34184 GACTTTGCCTGTGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCC 34125 Query 319176 CGCACCGTT 319184 ||||||||| Sbjct 34124 CGCACCGTT 34116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057772917348470