Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2339 104 2e-17 >seq2339 Length=71557 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||| || ||||| ||| ||| | | Sbjct 18707 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 18648 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || ||| ||||| ||||| | ||| || ||| Sbjct 18647 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 18588 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||||| || || || || || ||| | |||| || |||| |||||| Sbjct 18587 CAGCGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 18528 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||||||| || |||| | || | ||||| || Sbjct 18527 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGAGGTGG 18481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || ||||| || || | ||||| || ||||| || |||||| Sbjct 18842 GACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAA 18783 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | ||| | |||| |||||||||||||||||||||||||||||| Sbjct 18782 GATGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAATCTACTCTTCAC 18732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428316324519695