Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1251 125 8e-24 >seq1251 Length=400034 Score = 125 bits (138), Expect = 8e-24 Identities = 249/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGC 145925 || ||||||||| ||| | | ||||||||||||| ||||||| | | || ||| Sbjct 106238 CGACACGTAGAATTGGGCAAATACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCCG 106179 Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 | |||||| || | | || || || || | | || || ||||||||| | || Sbjct 106178 TGCGTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAAT 106119 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 || ||| ||||||||| || |||| || ||| || ||||||| || |||||| | Sbjct 106118 CACGTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCCGTCTTGGCATCGACGTACTC 106059 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 || || ||||||| ||| ||||| ||||| ||||| || || || || || | ||| Sbjct 106058 TGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCGAGATCGCCTACTTCACGGTG 105999 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || || | ||||||| || ||||| || ||| ||||||| || |||||||| Sbjct 105998 TGTGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCAAATTTTGACGCC 105939 Query 146166 --CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 | | || ||| || || | ||| ||| ||| ||||||||| || || || || Sbjct 105938 GGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGCG 105881 Query 146224 AGGAC 146228 | ||| Sbjct 105880 ATGAC 105876 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||| ||||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 106481 GTACACGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 106423 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | |||| ||||| ||||| || | |||||| || |||||||||||||| ||||| || | Sbjct 106422 GTGCGATCATGTGTGTCAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCAA 106363 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 106362 TGTCGCATGATCGTTGGTACAATTGACAG 106334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590049000006760