Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2339 95.1 1e-14 >seq2339 Length=71557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| ||||| || ||||| ||| ||| | | Sbjct 18707 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 18648 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| || ||| ||||| ||||| | ||| || ||| Sbjct 18647 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 18588 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||||| || || || | || ||| | |||| || |||| |||||| Sbjct 18587 CAGCGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 18528 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| |||||||| || |||| | || | ||||| || Sbjct 18527 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGAGGTGG 18481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410777930177366