Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2753 123 2e-23 seq2339 114 1e-20 seq2517 113 4e-20 seq3515 93.3 4e-14 >seq2753 Length=281039 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||||||| ||||| ||| Sbjct 117994 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 117935 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| || || ||||| || || || |||||||||||||| Sbjct 117934 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 117875 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | ||| Sbjct 117874 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 117815 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 117814 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || ||||||||||| || | ||||| |||||| ||||| Sbjct 19036 GTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTG 19095 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| ||||||||||| || || || || |||||||| || ||| || Sbjct 19096 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTGAATCTT 19155 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||| | ||||||||||| || | || |||||||| Sbjct 19156 CGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 19215 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCTTATTCTAT 118750 || || || || || || ||||||||| ||| || Sbjct 19216 GAGGGTCTTGACGAAGATTTGCATGGCTACTTCGAT 19251 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||| ||||| ||| | ||| || ||| || ||||| || ||| Sbjct 18739 GTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCA 18798 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| || || |||||||| ||| || || Sbjct 18799 GCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTG 18858 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || ||||||| ||| Sbjct 18859 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 18918 Query 118722 TTTACAA 118728 || |||| Sbjct 18919 TTGACAA 18925 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || || || |||||||||||||||| ||||| || || ||||| ||||| || | Sbjct 18289 TCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 18348 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || || || ||||| |||||||| |||||||||||||| ||| || ||| || | Sbjct 18349 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 18408 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 |||| |||||| | || || || | ||| | || || || |||| || || ||| Sbjct 18409 TCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 18468 Query 118728 AAAATCTGCAT 118738 ||||| ||||| Sbjct 18469 AAAATTTGCAT 18479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| || ||||| ||||| ||| || ||| || ||||||| Sbjct 18499 ACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 18558 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || ||||| || || || || ||||| ||||| ||| | Sbjct 18559 AGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGA 18618 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||||| || | || | || ||| Sbjct 18619 ATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTG 18678 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 18679 CCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 >seq2517 Length=100120 Score = 113 bits (124), Expect = 4e-20 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| |||| Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || ||||||||||||||| ||||| || || | ||| Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| |||||||| || || ||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 66330 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 66329 --CTGGATGGTGTATT 66316 >seq3515 Length=139295 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/245 (69%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 45057 TCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGC 45116 |||| ||||| || |||| || || | ||| ||| || ||||| | |||||||||| Sbjct 85188 TCAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGC 85247 Query 45117 CCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCG 45176 | | | | || |||||||| | |||||| | || ||||| |||||||||| Sbjct 85248 CGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAATATATTGAATTTGTCGCCG 85307 Query 45177 ATCGTCTTCTCG----TCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTC 45232 |||| || | | || | ||| | | ||| ||||| | || | ||||| ||| Sbjct 85308 ATCGCCTATTGGTTGCTCTTGGTAACGAA----AAGGTGTACAAAACCGCCAACCCCTTC 85363 Query 45233 GAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGC 45292 || || ||| | || ||||| |||| ||||| || || || || |||||||| || || Sbjct 85364 GATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAACGAGTTGGA 85423 Query 45293 GAATA 45297 ||||| Sbjct 85424 GAATA 85428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810472136148