Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2753 118 1e-21 seq2339 107 2e-18 seq2517 102 9e-17 >seq2753 Length=281039 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || ||| || || | Sbjct 117996 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 117937 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 117936 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 117877 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 117876 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 117818 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 117817 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 117779 >seq2339 Length=71557 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| || || || | || || |||||||| |||||||| Sbjct 19048 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 19107 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | ||| | | |||||| ||| ||| | || | |||| Sbjct 19108 GATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCC-TGAATCTTCGACTTGACAT 19166 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 19167 TGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 19226 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 19227 CGAAGATTTGCAT 19239 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| |||||||||| || |||||| ||||||||||| || | | Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || || || || |||||||| ||||| | || Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||| | | ||| | || | || | | | | ||| || ||||| || Sbjct 18601 ATGCCTTCCTTAT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 18659 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || || ||||| || | ||||| || ||||| ||||| Sbjct 18660 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 >seq2517 Length=100120 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | ||| || || |||| || |||||||| |||||||| | Sbjct 66511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 66452 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 66451 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 66392 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 66391 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 66332 Query 43174 A 43174 | Sbjct 66331 A 66331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571790660243320