Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2753 105 4e-18 seq2339 104 2e-17 seq2517 98.7 6e-16 >seq2753 Length=281039 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | || || || ||||| |||||||||||| | Sbjct 118008 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 117949 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || || || || || || |||||||| ||| Sbjct 117948 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 117889 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || || || Sbjct 117888 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 117829 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 117828 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATC 117781 >seq2339 Length=71557 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| || | |||| || ||||| || |||||||||||| Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | |||||| || || || || || ||||| ||||| ||| Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||||| || | |||| ||| | |||||||| Sbjct 18601 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 18660 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || | ||| || || ||||||||||| Sbjct 18661 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | |||||| || ||||| Sbjct 19049 TCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAG 19108 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| | |||| | | |||||| || ||||| ||| | || Sbjct 19109 ATTAGACGCTGCTGGTCAGGCGGG-ATTCCCTCCTTATCCTGAATCTTCGACTTGACATT 19167 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||| ||||| || | || ||||| ||||||||||| || || || Sbjct 19168 GTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 19227 Query 34378 AAAGATCTGCATCGCT 34393 ||||| ||||| ||| Sbjct 19228 GAAGATTTGCATGGCT 19243 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | |||| ||| ||||| || ||||||||||| || |||| | || Sbjct 18724 AGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCT 18783 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 |||| ||||||||| ||||| || | |||||||| || || || || || ||||||| Sbjct 18784 TCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATAC-CT-TCCTTGT 18841 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | || | | || | |||| || ||||| || | ||||||| Sbjct 18842 CCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGG 18901 Query 34356 TTTTGCCGGTGAGAGTTTTCACAA 34379 | || ||||| | ||| || |||| Sbjct 18902 TCTTTCCGGTCAAAGTCTTGACAA 18925 >seq2517 Length=100120 Score = 98.7 bits (108), Expect = 6e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| || |||| || | ||||||||| ||||| || Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | ||||||||||| ||| | || ||||||||| || || ||| | || | | Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| || | || ||||| || | |||||||| ||||| || ||||| || || || Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 66331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057159788640