Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2389 140 7e-28 >seq2389 Length=61879 Score = 140 bits (154), Expect = 7e-28 Identities = 432/665 (65%), Gaps = 15/665 (2%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| || ||| || | || | | ||||| ||||| || Sbjct 41004 CTTGACTCCGCCATTGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 41063 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | ||||||||||| || ||| |||||||||| Sbjct 41064 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTCGAGCGACCTCAGCACATG 41123 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || |||| ||| |||| | || || ||| Sbjct 41124 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTTTTGGAAACCTAC 41183 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||||||| Sbjct 41184 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCCGGT 41240 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || | | |||| | |||||| | ||| Sbjct 41241 ACCCCCCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGACATGAAGGACGACAGCATTGAC 41300 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | |||| || | ||| || || | || || || ||| Sbjct 41301 GGTATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATC 41357 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || || || || || || || Sbjct 41358 GGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTGCCGGCACCAACGGCACA 41417 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||| | | | ||||| Sbjct 41418 TCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCAG 41477 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| | ||| || | || ||||| ||| | || |||||||| ||| | Sbjct 41478 GGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGAGCCTTGGCACGCAGATGTG 41537 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| ||||||| || | | || || |||||| Sbjct 41538 TTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTC 41597 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | |||| |||||| Sbjct 41598 TTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGG 41657 Query 249433 ACGCT 249437 || || Sbjct 41658 ACCCT 41662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073714547484992