Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2389 351 9e-92 seq2339 105 6e-18 seq2517 91.5 1e-13 >seq2389 Length=61879 Score = 351 bits (388), Expect = 9e-92 Identities = 603/873 (69%), Gaps = 2/873 (0%) Strand=Plus/Minus Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || || |||| || |||||||||| |||| ||||| | ||||||||| ||||| | Sbjct 41881 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 41822 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || ||||||| || ||| ||||||| ||| | ||| | |||| || ||| | Sbjct 41821 GGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 41762 Query 23222 CGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACC 23280 ||| || | | ||| || ||| ||||| | ||| | || ||||| || | || Sbjct 41761 -GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCC 41703 Query 23281 GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT 23340 || || || ||||||||||| | | | ||||||||||| |||| || || Sbjct 41702 ATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTT 41643 Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| ||||| |||| || ||||| || ||||| ||||| ||| || ||||| || || Sbjct 41642 TTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACG 41583 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || |||||| ||||||| |||||| | |||||| ||||| || || ||||| Sbjct 41582 GTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGCCA 41523 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 |||||||| || | |||||| || || |||| ||| ||||||||||| || ||||| | Sbjct 41522 AGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCT 41463 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| | || | ||||| || | || |||||||| | |||| ||| Sbjct 41462 GGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCC 41403 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | || || | || || | | ||| |||| || || || || || || Sbjct 41402 GGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT 41343 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || || || |||||||||||||| || || |||||||| || || Sbjct 41342 CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTT 41283 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| | |||||| ||||||| || || ||| ||| |||| ||| ||||| Sbjct 41282 CATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGT 41223 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || |||||| || ||| | ||||| || | ||| || || | || || Sbjct 41222 AGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTC 41163 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||||| ||||| ||||||| || |||||||| ||||||| ||||||| |||||| Sbjct 41162 AATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGAC 41103 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | |||||| | ||||| |||||||| | | || || || || ||||| || | Sbjct 41102 GATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTG 41043 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||||| ||||| | |||| || ||||| || Sbjct 41042 ATAGTTGAAGTCTCTGTCGTAGACAATGGCGGA 41010 Score = 168 bits (186), Expect = 6e-37 Identities = 359/528 (68%), Gaps = 15/528 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| | || |||||||||||||| ||||||| |||||| | ||| || || || Sbjct 42838 GTGCGCAAGTAGTACATGCCCGTCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAG 42779 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| || |||| |||||| ||| |||||| Sbjct 42778 GTGATCTTGCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATA 42719 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCA-ATGTACGCATCGACATTTCCCATACGGT 22323 || || || |||||||| ||||| | || | ||| |||| || || ||||| ||||| Sbjct 42718 AAGGCACCGCGATCGGCCGCCATCTGGATAACATG-ACGCTGAGAAATCTCCCAAACGGT 42660 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 |||||| || | |||| || || || ||| | || |||| | ||| ||||| Sbjct 42659 CTTGTAGAGAGCCTTGATGTCGGCGGGGAT--ATTGGGGATGTTCTGAATGGAACCGTTC 42602 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | ||| ||| | ||| || || | ||| ||| Sbjct 42601 TCGGCAATGATGCGGTTCTTCATGGCATCCGACCAGAGACCCATATCGACGAGATCCTTG 42542 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || || || || | |||||| ||||| |||||||||||| Sbjct 42541 AGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTG 42482 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || || || | |||||||| ||||| || || | ||| || ||||| ||| Sbjct 42481 GACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGC 42422 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACT-CTTGAGC 22618 || || || | ||| | |||||| | | ||||||| |||| | | || ||| || Sbjct 42421 ATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA---TCTGCTCCTTCAGA 42365 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 | ||| ||||||| || || ||| | ||||| |||||| ||| Sbjct 42364 TTGTCCCACTCCCACAACTCAGAAGGCTTGACATT---CCACATGTCG 42320 >seq2339 Length=71557 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || || ||| | || || ||| | || Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||| ||| | || ||||||||| Sbjct 18419 GACACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 18360 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || ||| |||||||| || |||||||||| ||| Sbjct 18359 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAAC 18300 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||| || | ||||| || ||| | ||| | || ||| Sbjct 18299 ATCCAGAAGGAAAGCACCTTGCATCTCGTGCTTCGTCTGCGTGGTGGT 18252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || || || |||| || || |||| Sbjct 19240 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTC 19181 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || || ||| ||||| || | ||||| ||||| Sbjct 19180 TGACACTATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCGCCTGACCA 19121 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||||| |||||||| || ||| | || || Sbjct 19120 GCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGA 19085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || |||||| |||| || || || |||||| | || || || | ||||||| |||| Sbjct 18923 GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 18864 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| || || |||||||||||| | || || || |||||||| | || Sbjct 18863 AATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATC 18804 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 ||||||||||| ||| ||||||| ||| | ||| || || ||||| || ||| Sbjct 18803 TTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAA 18744 Query 31385 TCGACTCTTCATCTGGTACT 31404 || |||||||| || || || Sbjct 18743 TCTACTCTTCACCTTGTCCT 18724 >seq2517 Length=100120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||||||||| ||||| || |||||| | || || || | || |||| | Sbjct 66330 TTTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGAT 66389 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | ||| |||||||| ||| | || || ||||||||||| | Sbjct 66390 CGACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66449 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||||||||| ||| | || ||| | || || ||| || |||||||| || Sbjct 66450 GATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAA 66509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745398830480