Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3515 114 3e-20 seq2389 84.2 4e-11 >seq3515 Length=139295 Score = 114 bits (126), Expect = 3e-20 Identities = 294/443 (66%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTT-GCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 ||| || |||| ||||| || || || |||||||| || ||||| || || || |||||| Sbjct 84995 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTC 85054 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| ||||||| | ||| | |||| || ||||||| |||||| || | || || | Sbjct 85055 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGT 85114 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC 102094 || || ||| | || ||||||||||| |||||| | | | | | ||| Sbjct 85115 GATGAGGGTTTGCACACAGACTTTGCATG---TCTGTTGCACTCGCATCT--TAAGCACC 85169 Query 102095 ---CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| ||| || || ||| |||| || || || | ||||| ||||| Sbjct 85170 GAGCCAGCAAG-CAAATAATCAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAG 85228 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 ||| | || | | ||||| | | | || |||||| || |||||| || Sbjct 85229 TTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAA 85288 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 || ||||||||||| || ||| |||||||||| | || |||||| || || Sbjct 85289 TATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCTTGGTAACGAAAAGGTGTACAAA 85348 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||| |||||||| || |||||| | | ||||| ||||| || Sbjct 85349 ACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTC 85408 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || || |||| | || ||||| Sbjct 85409 GAGAAACGAGTTGGAGAATATCA 85431 >seq2389 Length=61879 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| |||||||| | |||| |||||| ||||||| | || | || Sbjct 41747 GCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAG 41688 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC--ACTCTCTCC 94515 ||| |||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 41687 GCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 41630 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||| | | ||| | ||| |||| || || | | | ||||| || Sbjct 41629 ATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTG 41570 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTC 94604 ||| ||||||| | |||| |||||| Sbjct 41569 CCGTGGTTCTTTCGCAAATCAAGAAAGTC 41541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989536212679395